Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25919

Metabolite ID
P25919
Deionized mass
922.3216 Da
Average m/z
923.3279
Average RT
14.8102
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)2.742e-17
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)1.475e-12
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)8.355e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.92e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.293e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.887e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.351e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.351e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.522e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.357e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)5.967e-11
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)7.798e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)6.657e-14
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)8.355e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.735e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.197e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.197e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.151e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.179e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.179e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.179e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.887e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.999e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.226e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.686e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.22e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.198e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.198e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.198e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.824e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.824e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.82e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.438e-15
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.282e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)9.964e-16
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.48e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.845e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.99e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.99e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.99e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.99e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.164e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.964e-14
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.739e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.758e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.758e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.292e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)5.343e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.92e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.856e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.188e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.615e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.188e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.188e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.191e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.329e-17
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.427e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.427e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)7.75e-12
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)9.903e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.708e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.708e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.641e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)3.652e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)3.97e-11
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)1.764e-11
Glyma.17G145900 hypothetical protein AT4G16820:PLA-I{beta]2:alpha/beta-Hydrolases superfamily protein 1Chr17:12027849–12029726 (+)1.584e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)8.061e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)8.573e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.18e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)7.97e-12
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)7.049e-13
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)2.794e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.887e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.803e-11
Glyma.20G123100 hypothetical protein AT2G01110:APG2:Sec-independent periplasmic protein translocase 1Chr20:36592639–36595961 (+)6.522e-11