P25859
Metabolite ID
P25859
Deionized mass
709.2569 Da
Average m/z
710.2650
Average RT
14.7923
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
110
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
110 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 3.119e-13 | |
| Glyma.13G134400 | hypothetical protein | AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein | 3 | Chr13:24677399–24693129 (-) | 1.056e-13 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 3 | Chr20:34984922–34988496 (+) | 2.11e-12 | |
| Glyma.02G176800 | hypothetical protein | AT5G06839:TGA10:bZIP transcription factor family protein | 2 | Chr02:29019977–29028838 (-) | 2.709e-15 | |
| Glyma.02G188300 | hypothetical protein | NA | 2 | Chr02:35008552–35027979 (-) | 3.347e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 2 | Chr03:2423540–2428634 (-) | 1.339e-14 | |
| Glyma.09G053800 | hypothetical protein | NA | 2 | Chr09:4737413–4755632 (-) | 7.559e-11 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 2 | Chr12:36390283–36394245 (-) | 1.29e-18 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 3.701e-18 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 1.839e-17 | |
| Glyma.13G135700 | hypothetical protein | NA | 2 | Chr13:24812720–24818735 (+) | 2.227e-12 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 2 | Chr13:24820151–24823999 (-) | 2.227e-12 | |
| Glyma.16G072000 | hypothetical protein | AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | 2 | Chr16:7255773–7261809 (+) | 1.359e-11 | |
| Glyma.16G121500 | hypothetical protein | NA | 2 | Chr16:27007186–27010856 (+) | 9.361e-14 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 3.119e-13 | |
| Glyma.20G013100 | hypothetical protein | NA | 2 | Chr20:1134080–1135710 (-) | 2.814e-13 | |
| Glyma.01G174300 | hypothetical protein | NA | 1 | Chr01:51115502–51120201 (+) | 9.114e-11 | |
| Glyma.01G174600 | hypothetical protein | AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) | 1 | Chr01:51138854–51141103 (+) | 9.114e-11 | |
| Glyma.02G006500 | hypothetical protein | AT4G01660:ABC1:ABC transporter 1 | 1 | Chr02:693193–700260 (+) | 9.984e-11 | |
| Glyma.02G181500 | hypothetical protein | AT3G57630:AT3G57630:exostosin family protein | 1 | Chr02:31040650–31054467 (+) | 6.32e-11 | |
| Glyma.02G204700 | hypothetical protein | AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein | 1 | Chr02:38993365–39000790 (+) | 4.384e-12 | |
| Glyma.02G205300 | hypothetical protein | NA | 1 | Chr02:39037472–39038396 (-) | 1.492e-12 | |
| Glyma.02G205400 | hypothetical protein | AT5G57880:MPS1:multipolar spindle 1 | 1 | Chr02:39040135–39043181 (-) | 1.658e-11 | |
| Glyma.03G001500 | B15-3-5 | AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase | 1 | Chr03:169480–172727 (+) | 5.741e-12 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 4.99e-12 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 3.693e-13 | |
| Glyma.03G022900 | hypothetical protein | NA | 1 | Chr03:2409690–2420328 (-) | 3.403e-12 | |
| Glyma.03G035400 | hypothetical protein | AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:4282985–4285957 (-) | 4.143e-12 | |
| Glyma.03G035500 | hypothetical protein | NA | 1 | Chr03:4289118–4294184 (+) | 1.473e-14 | |
| Glyma.04G086600 | hypothetical protein | NA | 1 | Chr04:7374806–7380808 (+) | 1.833e-14 | |
| Glyma.05G224200 | hypothetical protein | NA | 1 | Chr05:40307329–40312025 (+) | 1.837e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 5.789e-15 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 5.852e-19 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 8.227e-12 | |
| Glyma.06G315100 | hypothetical protein | AT5G04930:ALA1:aminophospholipid ATPase 1 | 1 | Chr06:50401945–50408153 (+) | 4.972e-12 | |
| Glyma.07G078900 | hypothetical protein | AT3G61080:AT3G61080:Protein kinase superfamily protein | 1 | Chr07:7187362–7192149 (+) | 4.833e-11 | |
| Glyma.07G080900 | hypothetical protein | NA | 1 | Chr07:7381339–7405785 (+) | 5.295e-11 | |
| Glyma.07G091400 | COL21 | CONSTANS-like zinc finger protein | AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein | 1 | Chr07:8539101–8547001 (+) | 3.502e-11 |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 2.673e-13 | |
| Glyma.08G116300 | P34 | NA | 1 | Chr08:8935918–8938248 (-) | 6.988e-11 | |
| Glyma.08G202000 | hypothetical protein | AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | 1 | Chr08:16375907–16384294 (-) | 3.169e-13 | |
| Glyma.08G239500 | hypothetical protein | AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr08:20444715–20447665 (-) | 6.122e-12 | |
| Glyma.08G330400 | hypothetical protein | NA | 1 | Chr08:44820327–44823668 (+) | 8.372e-14 | |
| Glyma.08G330500 | hypothetical protein | AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein | 1 | Chr08:44824324–44827127 (-) | 8.372e-14 | |
| Glyma.09G011700 | hypothetical protein | NA | 1 | Chr09:894858–897607 (-) | 6.415e-11 | |
| Glyma.09G012200 | hypothetical protein | AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) | 1 | Chr09:937048–940244 (+) | 2.87e-16 | |
| Glyma.09G016500 | hypothetical protein | NA | 1 | Chr09:1274652–1276853 (-) | 2.818e-12 | |
| Glyma.09G016800 | hypothetical protein | NA | 1 | Chr09:1300913–1311894 (+) | 1.08e-11 | |
| Glyma.09G019800 | VAMP721D | vesicle-associated membrane protein 721d | NA | 1 | Chr09:1540660–1547761 (+) | 1.398e-12 |
| Glyma.09G056300 | hypothetical protein | NA | 1 | Chr09:5059486–5068979 (+) | 5.963e-11 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 5.792e-13 | |
| Glyma.09G060300 | hypothetical protein | AT5G57140:PAP28:purple acid phosphatase 28 | 1 | Chr09:5609003–5612943 (+) | 1.119e-12 | |
| Glyma.09G068800 | hypothetical protein | AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein | 1 | Chr09:6979166–6993110 (-) | 6.935e-11 | |
| Glyma.09G210700 | hypothetical protein | AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein | 1 | Chr09:43466944–43471858 (-) | 1.093e-11 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 4.828e-11 | |
| Glyma.10G082100 | hypothetical protein | AT3G05680:EMB2016:embryo defective 2016 | 1 | Chr10:9934486–9960586 (-) | 1.734e-11 | |
| Glyma.11G095100 | hypothetical protein | NA | 1 | Chr11:7212438–7214276 (-) | 6.783e-11 | |
| Glyma.11G127100 | hypothetical protein | AT1G06040:STO:B-box zinc finger family protein | 1 | Chr11:9656242–9659517 (+) | 2.111e-11 | |
| Glyma.11G127200 | hypothetical protein | AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein | 1 | Chr11:9660434–9665570 (-) | 2.11e-11 | |
| Glyma.11G127300 | hypothetical protein | AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein | 1 | Chr11:9667918–9671917 (-) | 2.111e-11 | |
| Glyma.12G008300 | hypothetical protein | AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein | 1 | Chr12:613939–617457 (+) | 4.906e-11 | |
| Glyma.12G108600 | hypothetical protein | NA | 1 | Chr12:9994609–9997302 (-) | 1.266e-12 | |
| Glyma.12G109500 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:10308026–10314332 (-) | 1.266e-12 | |
| Glyma.12G202400 | hypothetical protein | AT4G03415:PP2C52:Protein phosphatase 2C family protein | 1 | Chr12:36289704–36295084 (-) | 3.229e-12 | |
| Glyma.12G203300 | hypothetical protein | AT4G03430:EMB2770:pre-mRNA splicing factor-like protein | 1 | Chr12:36371465–36377700 (-) | 2.304e-14 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.839e-17 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 6.134e-15 | |
| Glyma.12G205900 | hypothetical protein | NA | 1 | Chr12:36622011–36625824 (+) | 1.626e-11 | |
| Glyma.13G134300 | hypothetical protein | NA | 1 | Chr13:24664171–24665742 (-) | 1.056e-13 | |
| Glyma.13G134500 | hypothetical protein | AT3G09560:PAH1:Lipin family protein | 1 | Chr13:24696109–24705068 (-) | 1.664e-12 | |
| Glyma.13G135300 | hypothetical protein | NA | 1 | Chr13:24770681–24773826 (+) | 1.118e-11 | |
| Glyma.13G135400 | hypothetical protein | AT5G12130:PDE149:integral membrane TerC family protein | 1 | Chr13:24786242–24791938 (+) | 1.118e-11 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 2.227e-12 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 4.121e-11 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 5.996e-11 | |
| Glyma.13G204200 | hypothetical protein | NA | 1 | Chr13:31822330–31826011 (+) | 6.166e-14 | |
| Glyma.13G204400 | hypothetical protein | NA | 1 | Chr13:31852699–31857082 (+) | 1.739e-11 | |
| Glyma.13G204700 | hypothetical protein | AT1G11720:SS3:starch synthase 3 | 1 | Chr13:31872482–31883107 (-) | 7.685e-11 | |
| Glyma.13G204800 | hypothetical protein | AT4G04640:ATPC1:ATPase, F1 complex, gamma subunit protein | 1 | Chr13:31885462–31887911 (-) | 7.685e-11 | |
| Glyma.13G204900 | hypothetical protein | AT1G64570:DUO3:Homeodomain-like superfamily protein | 1 | Chr13:31888324–31898942 (-) | 7.685e-11 | |
| Glyma.14G204100 | hypothetical protein | AT1G06850:bZIP52:basic leucine-zipper 52 | 1 | Chr14:46886862–46890243 (-) | 1.553e-11 | |
| Glyma.15G070100 | hypothetical protein | AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein | 1 | Chr15:5355553–5364428 (+) | 9.47e-11 | |
| Glyma.15G071600 | hypothetical protein | AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein | 1 | Chr15:5481672–5488866 (-) | 9.47e-11 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 8.53e-11 | |
| Glyma.16G050500 | AFB3B | auxin signaling F-box 3 protein | AT3G26810:AFB2:auxin signaling F-box 2 | 1 | Chr16:4853237–4856710 (+) | 6.571e-11 |
| Glyma.16G050900 | COL16 | NA | 1 | Chr16:4874634–4878624 (+) | 1.706e-12 | |
| Glyma.16G057600 | hypothetical protein | AT3G27170:CLC-B:chloride channel B | 1 | Chr16:5650591–5655830 (+) | 4.094e-14 | |
| Glyma.16G057700 | hypothetical protein | AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr16:5656328–5663040 (-) | 3.609e-11 | |
| Glyma.16G063600 | hypothetical protein | NA | 1 | Chr16:6255512–6260421 (+) | 4.624e-11 | |
| Glyma.16G105400 | hypothetical protein | AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr16:21357465–21364357 (-) | 8.624e-11 | |
| Glyma.16G118100 | hypothetical protein | AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein | 1 | Chr16:26324650–26336836 (+) | 2.566e-12 | |
| Glyma.16G119300 | hypothetical protein | NA | 1 | Chr16:26643902–26644416 (+) | 2.55e-12 | |
| Glyma.16G121400 | hypothetical protein | NA | 1 | Chr16:26989007–26992349 (+) | 5.771e-13 | |
| Glyma.16G138800 | hypothetical protein | NA | 1 | Chr16:29609432–29615000 (+) | 8.46e-12 | |
| Glyma.16G141500 | bZIP117 | AT4G36730:GBF1:G-box binding factor 1 | 1 | Chr16:29960697–29967081 (-) | 3.67e-12 | |
| Glyma.16G145100 | hypothetical protein | NA | 1 | Chr16:30578388–30581421 (-) | 4.099e-11 | |
| Glyma.16G145600 | hypothetical protein | AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… | 1 | Chr16:30652378–30659548 (+) | 4.099e-11 | |
| Glyma.16G147000 | hypothetical protein | NA | 1 | Chr16:30773803–30777822 (-) | 2.108e-12 | |
| Glyma.16G179800 | hypothetical protein | AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein | 1 | Chr16:34022480–34027055 (-) | 1.966e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 1.829e-11 | |
| Glyma.18G201900 | hypothetical protein | NA | 1 | Chr18:48192545–48196624 (-) | 4.581e-11 | |
| Glyma.18G299100 | hypothetical protein | AT5G13420:TRA2:Aldolase-type TIM barrel family protein | 1 | Chr18:57674222–57678396 (+) | 2.866e-11 | |
| Glyma.19G006900 | hypothetical protein | AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr19:686556–692466 (-) | 8.177e-12 | |
| Glyma.19G009400 | hypothetical protein | AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein | 1 | Chr19:885045–893253 (+) | 1.945e-12 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 1.577e-12 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 1.577e-12 | |
| Glyma.19G032800 | hypothetical protein | NA | 1 | Chr19:4196959–4199265 (-) | 2.957e-11 | |
| Glyma.20G019500 | hypothetical protein | AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme | 1 | Chr20:2039210–2040459 (+) | 1.706e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 4.749e-15 | |
| Glyma.20G106900 | hypothetical protein | NA | 1 | Chr20:34962043–34967985 (+) | 2.359e-12 |