Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25817

Metabolite ID
P25817
Deionized mass
890.2955 Da
Average m/z
891.2990
Average RT
14.7788
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
131
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

131 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)8.657e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)4.805e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.494e-11
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)2.285e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 2Chr12:34708678–34710549 (+)7.344e-14
Glyma.12G186300 hypothetical protein NA 2Chr12:34717587–34719271 (+)4.271e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)8.531e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.419e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.105e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.365e-17
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.365e-17
Glyma.13G198600 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr13:31233913–31240731 (-)9.78e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.697e-14
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.15e-12
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2Chr16:7255773–7261809 (+)1.899e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)2.554e-15
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.562e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.073e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)8.801e-12
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)4.268e-13
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)7.767e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)6.854e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)6.854e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)6.854e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.35e-13
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)5.587e-11
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)9.036e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.26e-12
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)2.007e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)2.007e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)3.04e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)2.565e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.373e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.388e-16
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.599e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)2.275e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)5.18e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)4.595e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.006e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.708e-19
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.852e-18
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)1.815e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.993e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.307e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.002e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.938e-15
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)2.096e-12
Glyma.06G091500 hypothetical protein NA 1Chr06:7175769–7178554 (-)3.313e-12
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)4.882e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.625e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.625e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.863e-11
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.68e-12
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)3.613e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.294e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.336e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.336e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)9.816e-11
Glyma.08G120300 hypothetical protein NA 1Chr08:9269694–9276831 (+)7.202e-11
Glyma.08G223400 hypothetical protein AT1G51660:MKK4:mitogen-activated protein kinase kinase 4 1Chr08:18127350–18129276 (+)6.797e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)8.331e-13
Glyma.08G350900 hypothetical protein AT3G25030:AT3G25030:RING/U-box superfamily protein__AT3G07120:AT3G07120:RING/U-box superfamily protein 1Chr08:46461098–46464368 (+)2.822e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.747e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.939e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.407e-14
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)9.544e-13
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)3.566e-11
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)6.622e-11
Glyma.12G186000 hypothetical protein AT5G09225:AT5G09225:uncharacterized protein 1Chr12:34690356–34692672 (+)2.551e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)5.135e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.628e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.628e-15
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.639e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.105e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.882e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)7.188e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.805e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.756e-11
Glyma.13G135100 hypothetical protein AT5G02750:SGR9:RING/U-box superfamily protein 1Chr13:24744740–24746437 (+)2.695e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.229e-16
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.229e-16
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.365e-17
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)3.692e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)5.093e-12
Glyma.13G198800 hypothetical protein NA 1Chr13:31252110–31257733 (-)9.78e-11
Glyma.13G204700 hypothetical protein AT1G11720:SS3:starch synthase 3 1Chr13:31872482–31883107 (-)2.265e-11
Glyma.13G204800 hypothetical protein AT4G04640:ATPC1:ATPase, F1 complex, gamma subunit protein 1Chr13:31885462–31887911 (-)2.265e-11
Glyma.13G204900 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr13:31888324–31898942 (-)2.265e-11
Glyma.13G237900 hypothetical protein NA 1Chr13:34809361–34816888 (-)3.944e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.328e-12
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.019e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.019e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.019e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)6.897e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.14e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.186e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.8e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.931e-11
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)6.907e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.412e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.412e-14
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.83e-12
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 1Chr16:6914905–6920531 (+)2.956e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.107e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.64e-11
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.571e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.731e-14
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)5.691e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.318e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.968e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.968e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)8.534e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.148e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.31e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.551e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.719e-13
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)5.677e-13
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)2.783e-11
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)2.509e-12
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)5.15e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.577e-15
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.468e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.277e-16
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.373e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.374e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)4.035e-11
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)1.035e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.85e-16
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.583e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.235e-11
Glyma.20G100000 Thioredoxin-like fold domain-containing protein MRL7L, chloroplastic AT2G31840:MRL7-L:Thioredoxin superfamily protein 1Chr20:34320945–34324107 (+)4.717e-12