Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25763

Metabolite ID
P25763
Deionized mass
679.1931 Da
Average m/z
680.1997
Average RT
14.7654
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G205100 hypothetical protein NA 2Chr06:19392099–19394901 (+)5.347e-11
Glyma.06G206000 hypothetical protein AT5G08110:AT5G08110:UBQ, helicase-c and DEAD-like helicase domain-containing protein 2Chr06:19693187–19711341 (-)2.029e-11
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)5.09e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.769e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.424e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.4e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.994e-13
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)7.379e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)6.571e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.67e-12
Glyma.06G202200 hypothetical protein AT1G74310:HSP101:heat shock protein 101 1Chr06:18712866–18716868 (+)2.764e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)6.102e-11
Glyma.06G205000 hypothetical protein AT5G60940:AT5G60940:Transducin/WD40 repeat-like superfamily protein 1Chr06:19370642–19375687 (-)5.347e-11
Glyma.06G205800 AP1A agamous-like MADS-box AT5G60910:AGL8:AGAMOUS-like 8 1Chr06:19583729–19590906 (+)2.029e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)1.867e-11
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)1.867e-11
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)1.867e-11
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)1.867e-11
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)1.867e-11
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)1.867e-11
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)1.867e-11
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)1.867e-11
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)1.868e-11
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)1.867e-11
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)5.178e-11
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)5.178e-11
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)5.178e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.248e-11
Glyma.06G313600 hypothetical protein AT5G13750:ZIFL1:zinc induced facilitator-like 1 1Chr06:50219160–50226659 (-)3.148e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.007e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)7.007e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.475e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.77e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.813e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.813e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.813e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.813e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.136e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.339e-14
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.67e-12
Glyma.11G165900 hypothetical protein AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein 1Chr11:15890687–15912099 (-)5.392e-11
Glyma.11G166100 hypothetical protein AT2G30110:UBA1:ubiquitin-activating enzyme 1 1Chr11:15941545–15948932 (+)5.392e-11
Glyma.11G166200 hypothetical protein NA 1Chr11:15951003–15963149 (-)5.392e-11
Glyma.11G167100 hypothetical protein NA 1Chr11:16310396–16317417 (+)5.392e-11
Glyma.11G167400 hypothetical protein NA 1Chr11:16491689–16494364 (-)5.392e-11
Glyma.11G167800 hypothetical protein NA 1Chr11:16649420–16666371 (+)5.392e-11
Glyma.11G169500 hypothetical protein NA 1Chr11:18001828–18002310 (+)5.392e-11
Glyma.11G169700 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18034188–18046104 (-)5.392e-11
Glyma.11G170100 hypothetical protein NA 1Chr11:18127748–18139401 (-)5.392e-11
Glyma.11G170300 hypothetical protein AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 1Chr11:18242402–18247271 (+)5.392e-11
Glyma.11G170700 hypothetical protein AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 1Chr11:18313678–18328202 (-)5.392e-11
Glyma.11G170800 hypothetical protein NA 1Chr11:18343004–18346283 (+)5.392e-11
Glyma.11G170900 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18345392–18359356 (-)5.392e-11
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)1.122e-11
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)1.122e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)1.122e-11
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)1.122e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.769e-12
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)3.142e-11
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)7.298e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.536e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)1.216e-12
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)2.805e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)2.805e-11
Glyma.18G298800 hypothetical protein NA 1Chr18:57633577–57639546 (+)1.292e-11