Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25679

Metabolite ID
P25679
Deionized mass
170.1291 Da
Average m/z
171.1358
Average RT
14.7488
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
111
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

111 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.148e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.317e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.317e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.317e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.376e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)1.966e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.519e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.273e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.044e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.044e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.035e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.25e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)8.628e-12
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)5.413e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.148e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.799e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)3.565e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.653e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.646e-13
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)2.868e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.934e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.993e-14
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.395e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)4.892e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.484e-14
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.468e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)9.178e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.045e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.701e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.042e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)2.94e-15
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.159e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.159e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.549e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.549e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.489e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)6.158e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.118e-14
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.405e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.405e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)2.785e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)7.545e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)3.495e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.84e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.367e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.426e-15
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.317e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.317e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.317e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.317e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.317e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.175e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)2.043e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.528e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.553e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.553e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.553e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.553e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.084e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.924e-14
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)1.309e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.561e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.78e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.78e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.78e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.78e-12
Glyma.11G061800 hypothetical protein NA 1Chr11:4632831–4633552 (+)2.645e-11
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)3.909e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.103e-12
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)5.46e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)6.335e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)2.101e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)2.911e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.535e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.966e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.877e-14
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.273e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.136e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.136e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.044e-13
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.172e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.25e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.569e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.338e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.831e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.089e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.259e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.089e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.089e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)2.894e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.742e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.322e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.798e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.441e-12
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)4.891e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)7.181e-12
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)7.18e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.413e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)5.206e-13
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.413e-13
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)6.829e-12
Glyma.18G202100 hypothetical protein AT3G51850:CPK13:calcium-dependent protein kinase 13 1Chr18:48258271–48266554 (-)8.207e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.989e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.046e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.854e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.854e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.087e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.082e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.075e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.016e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.524e-12