Overview Annotation GWAS Evidence Associated genes

P25645

Metabolite ID
P25645
Deionized mass
753.3378 Da
Average m/z
754.3431
Average RT
14.7418
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
148
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

148 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.417e-13
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)8.155e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.01e-13
Glyma.03G246500 hypothetical protein AT5G49570:PNG1:peptide-N-glycanase 1 2Chr03:44341465–44350438 (-)5.447e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.662e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.712e-15
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.712e-15
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.711e-15
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.065e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.235e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.235e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)5.468e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)5.487e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)4.053e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.417e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)8.795e-13
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.632e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.879e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.686e-14
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)3.806e-11
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)1.432e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.408e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.097e-13
Glyma.03G246600 hypothetical protein NA 1Chr03:44355048–44357092 (+)5.447e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)2.693e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.373e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.128e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.685e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.342e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.989e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.892e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.892e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.892e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)7.271e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.457e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.223e-23
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.173e-18
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.154e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.935e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.935e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.983e-13
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)5.332e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.857e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.793e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.662e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.662e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.662e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.662e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.727e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)8.155e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)8.155e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.079e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.893e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.288e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.011e-13
Glyma.09G209200 hypothetical protein AT1G32160:AT1G32160:beta-casein (DUF760) 1Chr09:43361634–43365478 (-)1.211e-11
Glyma.09G209900 hypothetical protein AT1G31930:XLG3:extra-large GTP-binding protein 3 1Chr09:43412726–43419532 (+)7.442e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.925e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.162e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.034e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.711e-15
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.711e-15
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.712e-15
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.009e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.712e-15
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.712e-15
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.896e-14
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)4.732e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.341e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.341e-15
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.341e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.341e-15
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.899e-15
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.255e-17
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)7.149e-11
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)6.807e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.474e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.257e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.257e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.257e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.257e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.09e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.33e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.33e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.329e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.875e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.875e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.997e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.998e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)7.942e-14
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)6.657e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)4.541e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.55e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.006e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)6.11e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.408e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.408e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.01e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.475e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.332e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.332e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.235e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.419e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.2e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)9.449e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.035e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.035e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)7.841e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)7.366e-13
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)2.204e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)9.373e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)9.373e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.73e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.144e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.808e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.538e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.303e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.395e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.222e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)2.808e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.279e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.22e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.852e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.852e-14
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)8.606e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)8.606e-11
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)7.8e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.283e-11
Glyma.18G098900 hypothetical protein NA 1Chr18:10297476–10305043 (+)7.223e-12
Glyma.18G099000 hypothetical protein AT5G54920:AT5G54920:polyadenylate-binding protein interacting protein 1Chr18:10326925–10347143 (-)7.223e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)1.852e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.892e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)1.852e-11
Glyma.18G100300 hypothetical protein NA 1Chr18:10523838–10534676 (+)1.039e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.159e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)4.491e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.585e-14
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.773e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)6.118e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)8.186e-13
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)8.665e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.262e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.262e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.265e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.265e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.055e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.722e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.169e-12