Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25637

Metabolite ID
P25637
Deionized mass
428.1667 Da
Average m/z
857.3386
Average RT
14.7396
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
119
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

119 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.434e-12
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.82e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.455e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)1.488e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.002e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.466e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.466e-13
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)3.586e-11
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)7.942e-12
Glyma.16G139000 hypothetical protein NA 2Chr16:29623540–29631451 (+)4.088e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.434e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)2.257e-14
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.293e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)7.386e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)7.386e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)4.152e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)2.123e-12
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)2.123e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)1.93e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.247e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.647e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.854e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.391e-13
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.976e-12
Glyma.04G216000 hypothetical protein AT3G27740:CARA:carbamoyl phosphate synthetase A 1Chr04:48723367–48726816 (-)3.899e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)1.857e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)1.857e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)1.857e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.974e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.059e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.493e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.493e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.658e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.83e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.83e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.83e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.398e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.271e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.271e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.271e-13
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.028e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.028e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.813e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.813e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.264e-13
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.869e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)3.427e-13
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.3e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.3e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.168e-14
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)4.072e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)4.072e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)6.597e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.313e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.989e-13
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.538e-12
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.538e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.254e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)9.836e-11
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)2.879e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)2.879e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)2.879e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.007e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.037e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.673e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.055e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.614e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.427e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)4.896e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)4.896e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)1.71e-12
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.668e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.668e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.668e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.455e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.329e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.983e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.983e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.466e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.738e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.617e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.422e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)7.813e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)7.813e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.021e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.036e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.021e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.021e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.778e-12
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)2.342e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)3.359e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.011e-13
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)2.03e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.751e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.826e-12
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)6.535e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)6.535e-11
Glyma.16G137800 hypothetical protein NA 1Chr16:29480352–29487400 (-)2.297e-12
Glyma.16G138500 hypothetical protein NA 1Chr16:29564872–29566190 (+)3.998e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)9.001e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.068e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)8.179e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.974e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.506e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)2.565e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.481e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.481e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.62e-17
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)4.086e-12
Glyma.18G052300 hypothetical protein NA 1Chr18:4521958–4525815 (+)9.287e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.758e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.272e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.272e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.714e-13
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)6.804e-11
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)5.727e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)8.014e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.324e-11