Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25631

Metabolite ID
P25631
Deionized mass
462.2064 Da
Average m/z
463.2149
Average RT
14.7382
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)4.371e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.21e-14
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.043e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)7.06e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)6.755e-13
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)2.871e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.444e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.61e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.61e-15
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 2Chr14:6037810–6041899 (+)8.849e-13
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)3.659e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.633e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)9.307e-12
Glyma.01G174100 hypothetical protein NA 1Chr01:51102207–51104922 (+)7.285e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)5.822e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)5.822e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)6.619e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)8.194e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.067e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)9.831e-13
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.736e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)4.249e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)5.13e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.297e-12
Glyma.05G147900 hypothetical protein AT1G27340:LCR:Galactose oxidase/kelch repeat superfamily protein 1Chr05:34213379–34217429 (+)5.034e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)1.903e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)1.903e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.837e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.651e-11
Glyma.06G293700 hypothetical protein AT2G20740:AT2G20740:Tetraspanin family protein 1Chr06:48253149–48265560 (+)7.177e-12
Glyma.07G068100 hypothetical protein NA 1Chr07:6135478–6137135 (+)3.685e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.081e-13
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)2.937e-11
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)1.923e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)1.037e-12
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)1.517e-12
Glyma.08G116800 hypothetical protein AT1G29240:AT1G29240:transcription initiation factor TFIID subunit, putative (DUF688) 1Chr08:9006479–9010442 (-)6.169e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.089e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)2.557e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.755e-13
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)5.175e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.025e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.444e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.444e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.444e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.444e-14
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)3.42e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)8.706e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)6.662e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.906e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)8.483e-12
Glyma.13G133800 hypothetical protein AT3G53520:UXS1:UDP-glucuronic acid decarboxylase 1 1Chr13:24601574–24606756 (-)3.466e-11
Glyma.13G133900 hypothetical protein NA 1Chr13:24613843–24616128 (+)3.466e-11
Glyma.13G134000 hypothetical protein NA 1Chr13:24618272–24619048 (-)3.466e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.21e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.814e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.672e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.672e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.61e-15
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)5.189e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)8.849e-13
Glyma.14G071900 hypothetical protein AT1G19650:AT1G19650:Sec14p-like phosphatidylinositol transfer family protein__AT1G75370:AT1G75370:Sec14p-like phosphati… 1Chr14:6043655–6049030 (+)1.576e-11
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)6.62e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.788e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.356e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)4.264e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.533e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)7.06e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.631e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.631e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)2.999e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)4.948e-12