Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25579

Metabolite ID
P25579
Deionized mass
492.2320 Da
Average m/z
493.2402
Average RT
14.7269
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.968e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.665e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)9.135e-11
Glyma.09G057000 hypothetical protein NA 2Chr09:5140625–5145658 (+)1.822e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.808e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.808e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.377e-14
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.998e-11
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)7.44e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.707e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)4.698e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)9.826e-11
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)5.917e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.776e-23
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.057e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.282e-14
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)3.431e-14
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.465e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.002e-14
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.748e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)7.808e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.323e-12
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)7.794e-12
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)2.765e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.172e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)7.701e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)9.697e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)4.344e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)3.905e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.229e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.229e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.229e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.229e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.604e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.231e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)2.603e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)4.723e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.057e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.661e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.528e-15
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.99e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.99e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.99e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.407e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.71e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.64e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.828e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.711e-15
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)4.54e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.968e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)2.357e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)9.453e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.001e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)9.135e-11
Glyma.18G045600 hypothetical protein NA 1Chr18:3947197–3952541 (+)4.83e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)4.798e-13
Glyma.18G045800 hypothetical protein AT3G02710:AT3G02710:ARM repeat superfamily protein 1Chr18:3960056–3964823 (-)4.83e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)2e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.74e-14