Overview Annotation GWAS Evidence Associated genes

P25565

Metabolite ID
P25565
Deionized mass
493.1830 Da
Average m/z
494.1898
Average RT
14.7215
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
8
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

8 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.035e-12
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)3.237e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.895e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.878e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.743e-13
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)4.014e-13
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.505e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)3.722e-11