Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25505

Metabolite ID
P25505
Deionized mass
833.3882 Da
Average m/z
834.3987
Average RT
14.7053
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
113
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

113 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.062e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.113e-17
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.544e-16
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.357e-15
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)2.52e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.069e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.404e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.404e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)1.229e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)2.816e-11
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)5.937e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.406e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)7.07e-21
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)7.07e-21
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.062e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.152e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)6.15e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)6.479e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)7.485e-12
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)7.485e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.304e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.717e-12
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)5.984e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.235e-12
Glyma.04G188900 hypothetical protein NA 1Chr04:45982982–45986148 (+)4.411e-13
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.038e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.125e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.212e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.605e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.982e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.982e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.493e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.509e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.509e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.509e-14
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)2.802e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)6.71e-13
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)1.633e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.721e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.898e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.284e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.771e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.771e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)7.792e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.77e-13
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)5.744e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.572e-12
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.572e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.131e-12
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)7.934e-12
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.377e-14
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)8.867e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)7.291e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.544e-16
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.544e-16
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)3.983e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.559e-24
Glyma.08G105500 hypothetical protein AT1G24260:SEP3:K-box region and MADS-box transcription factor family protein 1Chr08:8128245–8135906 (-)3.152e-12
Glyma.08G214500 hypothetical protein AT1G15740:AT1G15740:Leucine-rich repeat family protein 1Chr08:17333345–17342698 (+)1.322e-12
Glyma.08G227900 hypothetical protein NA 1Chr08:18551920–18567339 (-)1.689e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)8.181e-13
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.313e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.953e-13
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)2.673e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)2.407e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.492e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.235e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)3.963e-15
Glyma.09G187600 hypothetical protein AT5G19460:NUDT20:nudix hydrolase homolog 20 1Chr09:41213588–41217191 (+)9.844e-12
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)7.206e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)2.95e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.427e-14
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.788e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)5.772e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)7.765e-11
Glyma.10G137800 hypothetical protein AT4G01800:AGY1:Albino or Glassy Yellow 1 1Chr10:37158326–37170155 (+)8.188e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.796e-11
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)9.857e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)9.857e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)9.857e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.424e-17
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)2.205e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.217e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.217e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.191e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.191e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.404e-11
Glyma.13G182200 hypothetical protein AT3G45100:SETH2:UDP-Glycosyltransferase superfamily protein 1Chr13:29529252–29533936 (+)2.462e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.917e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.179e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.344e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.354e-11
Glyma.16G051900 hypothetical protein NA 1Chr16:5009359–5009660 (+)9.912e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.836e-13
Glyma.16G058100 hypothetical protein AT5G14180:MPL1:Myzus persicae-induced lipase 1 1Chr16:5685464–5692098 (+)1.361e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)5.286e-11
Glyma.16G198600 hypothetical protein AT5G52060:BAG1:BCL-2-associated athano 1 1Chr16:35958085–35960833 (+)6.22e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)5.937e-13
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.848e-12
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)5.937e-13
Glyma.18G220200 hypothetical protein AT2G38650:GAUT7:galacturonosyltransferase 7 1Chr18:50714270–50723555 (-)6.078e-12
Glyma.18G220300 hypothetical protein NA 1Chr18:50719690–50720509 (-)6.078e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.573e-16
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)3.788e-15
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.407e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)1.124e-11
Glyma.19G138700 hypothetical protein AT2G41740:VLN2:villin 2 1Chr19:40010487–40023584 (-)5.001e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.934e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.885e-12
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)1.983e-12
Glyma.20G221400 hypothetical protein NA 1Chr20:45645388–45648171 (-)7.078e-11
Glyma.20G222300 hypothetical protein AT2G20410:AT2G20410:RNA-binding ASCH domain protein 1Chr20:45708496–45710397 (-)7.078e-11
Glyma.20G223300 hypothetical protein AT1G09770:CDC5:cell division cycle 5 1Chr20:45791239–45803369 (-)1.744e-11