Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25330

Metabolite ID
P25330
Deionized mass
138.0666 Da
Average m/z
139.0733
Average RT
14.6742
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 4Chr03:169480–172727 (+)2.325e-15
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.834e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.051e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.221e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)7.748e-11
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)6.278e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.834e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.698e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.167e-12
Glyma.03G001700 hypothetical protein NA 1Chr03:187374–191041 (+)1.346e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.371e-15
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)6.606e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.64e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)4.39e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.732e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.468e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.051e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.2e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.183e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.838e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.838e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.838e-11
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)4.802e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.365e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)6.386e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.722e-12
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)3.809e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)1.801e-11
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)1.18e-11
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)9.096e-11
Glyma.08G123500 hypothetical protein NA 1Chr08:9494946–9505931 (-)9.264e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.765e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.517e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)1.281e-12
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)9.896e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.245e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.241e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.221e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.701e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.701e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.701e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.671e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.185e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.239e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.239e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.873e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.181e-14
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.748e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.739e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.689e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.501e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)9.275e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)4.944e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.038e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)1.032e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.414e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.806e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.806e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)9.159e-11
Glyma.19G138700 hypothetical protein AT2G41740:VLN2:villin 2 1Chr19:40010487–40023584 (-)8.309e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)7.138e-11