Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25306

Metabolite ID
P25306
Deionized mass
202.1007 Da
Average m/z
203.1090
Average RT
14.6694
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
150
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

150 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)4.297e-14
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.351e-11
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)9.28e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.591e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.127e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.266e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)2.108e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.411e-11
Glyma.16G178800 hypothetical protein NA 3Chr16:33950003–33953968 (-)8.854e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)3.674e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)9.313e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)4.524e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)8.639e-17
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)1.909e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.603e-15
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 2Chr16:33954446–33960344 (+)4.751e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.948e-16
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)8.747e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)7.009e-21
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)7.009e-21
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.351e-11
Glyma.19G128100 hypothetical protein NA 2Chr19:38728037–38732422 (+)8.556e-15
Glyma.19G128200 hypothetical protein NA 2Chr19:38739769–38743404 (+)8.478e-20
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)2.499e-12
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)2.499e-12
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)2.499e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.165e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.807e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)2.672e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.022e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)7.939e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.772e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.772e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.772e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.772e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.772e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.772e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.772e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)3.674e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.253e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.253e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)6.873e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)1.342e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.509e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.662e-16
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.252e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.292e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)7.604e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)7.29e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.55e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.198e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.279e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.279e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.279e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.804e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.804e-11
Glyma.06G202300 SF3'H1 flavonoid 3'-hydroxylase AT5G07990:TT7:Cytochrome P450 superfamily protein 1Chr06:18731105–18738025 (+)7.57e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.591e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.591e-11
Glyma.06G309100 hypothetical protein NA 1Chr06:49771514–49774691 (+)8.545e-11
Glyma.06G309400 hypothetical protein AT5G07040:AT5G07040:RING/U-box superfamily protein 1Chr06:49792092–49792649 (+)3.913e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.617e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.85e-15
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.226e-13
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)5.14e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)5.14e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.336e-11
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)2.936e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)2.936e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)2.936e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.163e-23
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.674e-36
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.881e-31
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.305e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.305e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.305e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.305e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.275e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.841e-12
Glyma.11G089300 hypothetical protein AT1G14120:AT1G14120:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr11:6759141–6761139 (-)8.162e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)9.229e-16
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)3.945e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.897e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.806e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.806e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.444e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.444e-13
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.999e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.672e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)7.679e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.351e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.394e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.764e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.365e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.905e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.905e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.691e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)4.718e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)4.718e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)4.718e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)1.792e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.211e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.089e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.211e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.211e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.67e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.839e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.756e-17
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)2.636e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.558e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.558e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.442e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.177e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.314e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.266e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.266e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.597e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.814e-14
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)9.497e-14
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.464e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)7.875e-12
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)9.745e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.767e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.097e-14
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.382e-12
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)4.472e-12
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)3.979e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)1.701e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.108e-13
Glyma.16G145500 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr16:30630177–30636253 (+)7.604e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)3.697e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)3.697e-11
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.176e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)4.056e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)4.056e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.665e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.793e-14
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)2.279e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.037e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.037e-11
Glyma.17G169100 hypothetical protein AT3G50210:AT3G50210:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein__AT3G49620:DIN11:2-oxogluta… 1Chr17:15650607–15655215 (-)7.432e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)9.726e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.948e-16
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)4.03e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)4.03e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)4.03e-11
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)5.816e-13
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)2.555e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)4.578e-11
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)5.574e-11