Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25170

Metabolite ID
P25170
Deionized mass
200.0938 Da
Average m/z
201.1020
Average RT
14.6337
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)4.922e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.246e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.246e-11
Glyma.16G078200 hypothetical protein AT3G21600:AT3G21600:Senescence/dehydration-associated protein-like protein 2Chr16:8060944–8066661 (-)7.369e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.742e-12
Glyma.01G010200 hypothetical protein AT1G32060:PRK:phosphoribulokinase 1Chr01:993024–997480 (-)1.02e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)1.123e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)4.922e-11
Glyma.02G222400 hypothetical protein AT2G36460:FBA6:Aldolase superfamily protein 1Chr02:40998557–41001678 (-)4.063e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.955e-14
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)9.437e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)8.722e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)8.851e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)8.851e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)4.042e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)3.774e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.199e-11
Glyma.11G048400 hypothetical protein AT1G64960:HEB1:ARM repeat superfamily protein 1Chr11:3607209–3613592 (-)2.71e-14
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)2.713e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.851e-11
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)4.155e-11
Glyma.11G109900 hypothetical protein AT4G27630:GTG2:GPCR-type G protein 2 1Chr11:8378708–8386493 (-)1.636e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.893e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.78e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.78e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.622e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.622e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.246e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.368e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.183e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.183e-13
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)3.209e-11
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)4.845e-11
Glyma.16G138800 hypothetical protein NA 1Chr16:29609432–29615000 (+)9.69e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)3.041e-11
Glyma.18G263300 hypothetical protein AT5G39420:cdc2cAt:CDC2C 1Chr18:54865827–54872924 (-)5.36e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)4.991e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.836e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)7.771e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.483e-15
Glyma.18G301600 hypothetical protein AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein 1Chr18:57939468–57945328 (+)6.149e-11
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.981e-12