Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25093

Metabolite ID
P25093
Deionized mass
982.2779 Da
Average m/z
983.2846
Average RT
14.6144
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
80
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

80 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)8.131e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.029e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.009e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.988e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)7.975e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.905e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.117e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.117e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.117e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)3.24e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.798e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 2Chr16:26057276–26069534 (+)2.879e-13
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)1.039e-15
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.432e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)6.621e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.347e-13
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.239e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.387e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.199e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)8.131e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)8.131e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)8.131e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.214e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.076e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.076e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.076e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.347e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.075e-16
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.842e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.842e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.842e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.843e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.843e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.138e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.023e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.138e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.138e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.023e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.905e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.905e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.905e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.905e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.563e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.563e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.194e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.117e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.117e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.117e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.117e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.117e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.01e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.003e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.003e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.003e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.003e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.868e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)3.667e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.419e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.041e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.83e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.041e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.04e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.176e-14
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)7.892e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.798e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.03e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.03e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.03e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.029e-12
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.728e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)5.21e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.988e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.988e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.22e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.727e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.759e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.759e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.722e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.873e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.651e-11