Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P25036

Metabolite ID
P25036
Deionized mass
870.3065 Da
Average m/z
871.3204
Average RT
14.5969
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.336e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.18e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.135e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)8.211e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)8.212e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.841e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.337e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)5.469e-11
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)7.511e-14
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.645e-15
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)3.327e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.837e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.837e-12
Glyma.02G065200 hypothetical protein NA 1Chr02:5807044–5809742 (+)3.509e-11
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)3.778e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.128e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)3.152e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)8.129e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.112e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.366e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.734e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.533e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)6.514e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.793e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)8.492e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.773e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)2.477e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)8.162e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.18e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.482e-15
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)4.64e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.481e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.481e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.102e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.102e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)8.211e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)8.963e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.389e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.337e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.693e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.062e-16
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.33e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.062e-16
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.062e-16
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.595e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.469e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.097e-11
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)8.777e-11
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)8.777e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)4.491e-14
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)8.339e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.602e-16
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)5.834e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.602e-16
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.645e-15
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.299e-14
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)4.993e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.772e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)1.778e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.505e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.984e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.718e-11