Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24795

Metabolite ID
P24795
Deionized mass
535.2631 Da
Average m/z
536.2663
Average RT
14.5224
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)2.02e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.023e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.665e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.178e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.178e-16
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)5.511e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.258e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.544e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.259e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.382e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.792e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.139e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)5.69e-11
Glyma.06G091500 hypothetical protein NA 1Chr06:7175769–7178554 (-)5.86e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.067e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.067e-11
Glyma.06G293300 hypothetical protein AT4G28280:LLG3:LORELEI-LIKE-GPI ANCHORED PROTEIN 3 1Chr06:48198132–48201464 (-)1.296e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)7.67e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)8.142e-12
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)8.142e-12
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)8.142e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.015e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.182e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.846e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.846e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.846e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.846e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.824e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.042e-12
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)5.814e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.998e-13
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)3.486e-11
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)3.485e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.252e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.252e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.31e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.665e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.05e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.05e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.178e-16
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.647e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.647e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)4.274e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.695e-14
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)5.594e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)5.594e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.785e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.343e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.28e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)9.076e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.942e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)2.02e-12
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)8.247e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)8.243e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)8.247e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)8.247e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)3.055e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.096e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.298e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.767e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.608e-12