Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24758

Metabolite ID
P24758
Deionized mass
538.2213 Da
Average m/z
539.2259
Average RT
14.5157
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)5.247e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.988e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.634e-12
Glyma.15G152400 hypothetical protein NA 2Chr15:12641790–12646649 (+)3.676e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)2.191e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)9.859e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)9.859e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)4.12e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.826e-14
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)4.417e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)2.602e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.278e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.197e-12
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.197e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.828e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.828e-12
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)7.394e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.652e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)9.403e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)9.403e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)5.463e-12
Glyma.08G147300 hypothetical protein NA 1Chr08:11238871–11242682 (+)1.417e-11
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)6.328e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.989e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.989e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.827e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)8.979e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.832e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.832e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.832e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.832e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)5.141e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)5.141e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)5.14e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.74e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)7.258e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)1.355e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)1.504e-11
Glyma.11G184600 hypothetical protein AT4G08960:AT4G08960:phosphotyrosyl phosphatase activator (PTPA) family protein 1Chr11:25265163–25267323 (-)5.944e-11
Glyma.11G184900 hypothetical protein AT3G44530:HIRA:histone chaperone HIRA-like protein 1Chr11:25289268–25298978 (+)5.944e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.639e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.639e-11
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)7.391e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)8.724e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.504e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.953e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.504e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.504e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.445e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.6e-12
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)3.676e-12
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)3.676e-12
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)4.993e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)5.467e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.853e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)9.292e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.429e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.861e-11
Glyma.16G198800 hypothetical protein NA 1Chr16:36006373–36020152 (-)9.698e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.644e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.644e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.493e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.493e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.91e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)6.288e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.379e-14
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.776e-13
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.625e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)1.611e-12
Glyma.19G188200 hypothetical protein NA 1Chr19:44647446–44649620 (-)3.524e-18
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.129e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.062e-11