Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24665

Metabolite ID
P24665
Deionized mass
682.1730 Da
Average m/z
683.1817
Average RT
14.4884
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)4.61e-12
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.812e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.859e-13
Glyma.10G272800 hypothetical protein AT1G25350:OVA9:glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS 2Chr10:49530856–49539222 (+)3.573e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.919e-13
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)6.306e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)9.592e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)5.549e-12
Glyma.01G022800 hypothetical protein AT5G65490:AT5G65490:suppressor-like protein 1Chr01:2296901–2303966 (+)5.161e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)8.28e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.071e-11
Glyma.04G191400 hypothetical protein AT3G48380:AT3G48380:Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2 1Chr04:46220242–46235879 (+)8.338e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)8.567e-14
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.685e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.879e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)2.619e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.571e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.589e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.337e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.963e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.963e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.963e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.963e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.506e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.938e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.636e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.636e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.636e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)9.391e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.876e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.087e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.876e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.876e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.012e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.413e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)8.01e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)4.61e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)5.776e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.567e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.326e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.174e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.174e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)7.41e-11