Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24523

Metabolite ID
P24523
Deionized mass
266.1515 Da
Average m/z
267.1566
Average RT
14.4389
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)1.104e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)3.082e-13
Glyma.03G028200 hypothetical protein AT3G56830:AT3G56830:YCF20-like protein (DUF565) 2Chr03:3098311–3101432 (-)2.72e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.133e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)7.909e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)8.584e-16
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 2Chr18:55076548–55086297 (+)1.137e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.741e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)4.141e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.568e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)5.704e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)3.672e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)3.672e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)3.672e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)3.672e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)3.672e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)3.672e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)3.672e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)1.104e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.499e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.07e-12
Glyma.02G153000 hypothetical protein AT1G06830:AT1G06830:Glutaredoxin family protein 1Chr02:15723361–15724183 (-)5.163e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)8.137e-13
Glyma.03G028100 hypothetical protein NA 1Chr03:3092062–3096481 (+)2.72e-11
Glyma.03G028300 hypothetical protein AT3G05100:AT3G05100:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:3103251–3106226 (-)2.72e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)3.255e-11
Glyma.03G078700 hypothetical protein NA 1Chr03:19749063–19752544 (-)2.55e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.192e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.672e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.013e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.051e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.051e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)1.016e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.837e-12
Glyma.09G210800 hypothetical protein AT1G32050:SCAMP5:SCAMP family protein 1Chr09:43476243–43482337 (+)5.687e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.034e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.034e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)4.966e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.034e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.034e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.256e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.874e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.874e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.874e-13
Glyma.12G059300 hypothetical protein NA 1Chr12:4289989–4292215 (-)1.13e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)3.002e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.903e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.839e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.178e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.075e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)8.584e-16
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.469e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)5.44e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.675e-14
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)7.206e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.739e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.739e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.607e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.607e-13