Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24447

Metabolite ID
P24447
Deionized mass
283.1463 Da
Average m/z
284.1532
Average RT
14.4188
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)1.182e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.62e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.425e-11
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)2.094e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)2.094e-11
Glyma.04G190900 hypothetical protein AT5G63160:BT1:BTB and TAZ domain protein 1__AT3G48360:BT2:BTB and TAZ domain protein 2 1Chr04:46152356–46155245 (-)9.137e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.345e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.83e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.736e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.34e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.215e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.396e-12
Glyma.06G261500 hypothetical protein NA 1Chr06:44829183–44833460 (-)4.819e-14
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)3.199e-14
Glyma.06G283400 hypothetical protein NA 1Chr06:47132958–47137448 (+)3.878e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)8.218e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)8.916e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)8.218e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)8.218e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)8.916e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.061e-11
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)5.147e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.181e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)4.497e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)7.277e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.341e-12
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)7.842e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.425e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)2.873e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)8.644e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.701e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.386e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.83e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)2.348e-11
Glyma.18G213700 hypothetical protein NA 1Chr18:50068173–50075808 (-)1.96e-12
Glyma.18G217900 hypothetical protein AT5G01960:AT5G01960:RING/U-box superfamily protein 1Chr18:50503692–50508948 (+)3.315e-11
Glyma.18G218000 hypothetical protein NA 1Chr18:50506857–50512742 (-)3.315e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.453e-13
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)1.109e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)1.194e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.084e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.084e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.046e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.478e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.784e-12