Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24425

Metabolite ID
P24425
Deionized mass
493.1685 Da
Average m/z
494.1764
Average RT
14.4127
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.207e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.207e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.053e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.052e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.053e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.713e-14
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.944e-12
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)8.571e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.049e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.513e-11
Glyma.03G202700 hypothetical protein AT5G16280:AT5G16280:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr03:41108071–41128352 (+)5.055e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.914e-14
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)3.522e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.012e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)1.573e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.438e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)8.244e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.207e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.207e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.207e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.713e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.982e-13
Glyma.08G294900 hypothetical protein AT1G59720:CRR28:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:41002768–41005138 (-)8.76e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.053e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.053e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.052e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.758e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.053e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.053e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.767e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.91e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.91e-11
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)5.742e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.829e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)3.657e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.875e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.762e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.305e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)4.511e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)5.716e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.832e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.832e-11