Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24362

Metabolite ID
P24362
Deionized mass
232.1068 Da
Average m/z
233.1148
Average RT
14.3967
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.363e-13
Glyma.07G095000 hypothetical protein NA 3Chr07:8843665–8855430 (+)4.013e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.896e-15
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 2Chr10:3270545–3283318 (-)6.667e-17
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)2.449e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.808e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.682e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.564e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)7.442e-11
Glyma.03G151600 hypothetical protein NA 1Chr03:36646870–36655321 (+)7.057e-11
Glyma.03G154000 hypothetical protein NA 1Chr03:36898114–36903520 (-)8.842e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.412e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.945e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.372e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.126e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.126e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.126e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)4.289e-12
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)8.478e-13
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)2.202e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.669e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.032e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.657e-12
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.608e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)6.963e-12
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)3.514e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)3.974e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.363e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.363e-13
Glyma.07G033200 hypothetical protein AT1G52770:AT1G52770:Phototropic-responsive NPH3 family protein 1Chr07:2603812–2606511 (+)2.223e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)4.754e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)4.754e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.362e-21
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.578e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.306e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)8.355e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.728e-13
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)9.225e-13
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)9.13e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.482e-15
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.499e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.499e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)6.565e-13
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.518e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.57e-11
Glyma.16G207800 hypothetical protein AT4G15093:LigB:catalytic LigB subunit of aromatic ring-opening dioxygenase family 1Chr16:36750028–36751833 (-)7.061e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.654e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.497e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.497e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)4.675e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.728e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.728e-11
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)1.234e-11
Glyma.19G097500 hypothetical protein NA 1Chr19:34218274–34220308 (-)8.689e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.25e-11
Glyma.20G221400 hypothetical protein NA 1Chr20:45645388–45648171 (-)6.116e-13
Glyma.20G222300 hypothetical protein AT2G20410:AT2G20410:RNA-binding ASCH domain protein 1Chr20:45708496–45710397 (-)6.116e-13