Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24174

Metabolite ID
P24174
Deionized mass
153.1151 Da
Average m/z
154.1218
Average RT
14.3393
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)6.116e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.864e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.49e-15
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.695e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)9.094e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.116e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)4.573e-11
Glyma.05G206200 hypothetical protein AT1G63410:AT1G63410:LURP-one-like protein (DUF567) 1Chr05:38904753–38908922 (-)2.911e-11
Glyma.05G207900 hypothetical protein AT4G11450:AT4G11450:bromo-adjacent domain protein, putative (DUF3527) 1Chr05:39000306–39005331 (+)3.487e-11
Glyma.05G208000 hypothetical protein NA 1Chr05:39007106–39011525 (-)3.487e-11
Glyma.05G208100 hypothetical protein AT1G63640:AT1G63640:P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-co… 1Chr05:39013785–39022216 (-)3.487e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.244e-11
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)1.416e-11
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)5.94e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)5.94e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)5.94e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.712e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.299e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.487e-14
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)2.71e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)1.517e-12
Glyma.10G267300 hypothetical protein NA 1Chr10:49038069–49040697 (-)5.888e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.094e-12
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)1.974e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.49e-15
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)8.246e-11
Glyma.14G177500 hypothetical protein AT3G13620:PUT4:Amino acid permease family protein 1Chr14:43740577–43742476 (-)8.389e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)6.556e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)6.556e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.801e-12
Glyma.18G301900 hypothetical protein AT5G13190:GILP:GSH-induced LITAF domain protein 1Chr18:57953323–57956369 (-)2.212e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.871e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.871e-14
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.829e-11
Glyma.19G151800 hypothetical protein NA 1Chr19:41234463–41236341 (-)4.457e-12
Glyma.19G151900 hypothetical protein AT4G04402:AT4G04402:two-component phosphorelay mediator__AT1G03430:AHP5:histidine-containing phosphotransfer factor 5 1Chr19:41241439–41243759 (-)4.457e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.608e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.748e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)4.975e-11
Glyma.20G112600 hypothetical protein AT5G04310:AT5G04310:Pectin lyase-like superfamily protein 1Chr20:35468911–35474203 (+)3.998e-11