Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P24059

Metabolite ID
P24059
Deionized mass
386.2359 Da
Average m/z
387.2442
Average RT
14.3033
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
65
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

65 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)8.1e-11
Glyma.07G058300 hypothetical protein AT1G01450:AT1G01450:Protein kinase superfamily protein 2Chr07:5208488–5211264 (-)6.659e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.447e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.447e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.296e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)4.075e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.813e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.142e-13
Glyma.03G041500 hypothetical protein NA 1Chr03:5249601–5251509 (-)4.098e-11
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)4.332e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.633e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)7.895e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.565e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.155e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.17e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)6.74e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)4.072e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)3.844e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)2.902e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)2.902e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.943e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.943e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)2.902e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.344e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)6.282e-12
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)6.018e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)5.379e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.447e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.447e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)6.199e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.447e-12
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)6.823e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.771e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.771e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.77e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.77e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.927e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.788e-15
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.734e-15
Glyma.11G048600 hypothetical protein AT5G67470:FH6:formin homolog 6 1Chr11:3634128–3639401 (-)3.8e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.341e-17
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.128e-16
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.128e-16
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.128e-16
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.128e-16
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.213e-12
Glyma.11G171200 hypothetical protein AT5G58610:AT5G58610:PHD finger transcription factor 1Chr11:18475119–18484515 (+)8.816e-11
Glyma.11G171500 hypothetical protein NA 1Chr11:18629660–18631015 (+)8.816e-11
Glyma.11G171800 hypothetical protein NA 1Chr11:18663180–18666591 (-)8.816e-11
Glyma.11G172200 hypothetical protein AT1G07110:F2KP:fructose-2,6-bisphosphatase 1Chr11:18702580–18708310 (+)8.816e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.296e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.833e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)3.833e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)3.833e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)5.485e-15
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)1.372e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.255e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.975e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.892e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.71e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.094e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.797e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.797e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)8.531e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)8.827e-11