Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23952

Metabolite ID
P23952
Deionized mass
569.1139 Da
Average m/z
570.1217
Average RT
14.2721
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
90
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

90 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.784e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.723e-13
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)3.006e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.405e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.658e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)4.561e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.332e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.164e-13
Glyma.16G161500 hypothetical protein NA 2Chr16:32076715–32092322 (-)8.29e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)4.241e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.723e-13
Glyma.01G018000 hypothetical protein NA 1Chr01:1736217–1737749 (-)7.221e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.464e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.865e-15
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)2.36e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.679e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.948e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.343e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.327e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.331e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.53e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.152e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.152e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.152e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.404e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.404e-13
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)7.972e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.631e-13
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)7.972e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)7.972e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.631e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.964e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.253e-12
Glyma.07G078900 hypothetical protein AT3G61080:AT3G61080:Protein kinase superfamily protein 1Chr07:7187362–7192149 (+)7.704e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)2.734e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)2.734e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)1.605e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.713e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.713e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.713e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.027e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.561e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.487e-12
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)1.855e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.653e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)2.852e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.852e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.164e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.126e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.334e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.895e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.334e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.334e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.841e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.529e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)8.413e-11
Glyma.16G063600 hypothetical protein NA 1Chr16:6255512–6260421 (+)1.631e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.67e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.784e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.774e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.405e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.405e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.405e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.405e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.061e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.62e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.331e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.13e-11
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)2.557e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)4.514e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.813e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)5.992e-12
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 1Chr16:30388030–30390647 (-)5.96e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.688e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.688e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.861e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)3.394e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)6.922e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.915e-13
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)1.658e-11
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)1.658e-11
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)1.658e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)3.964e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.746e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.989e-15
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.902e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.902e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.84e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)4.19e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.19e-11