Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23499

Metabolite ID
P23499
Deionized mass
888.3939 Da
Average m/z
889.4058
Average RT
14.1440
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 4Chr06:49451501–49461369 (-)3.395e-13
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.33e-15
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.513e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.67e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.886e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.444e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)7.452e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.381e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.198e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.198e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.679e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.825e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.824e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.825e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.247e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.247e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.247e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.51e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.51e-12
Glyma.06G301000 hypothetical protein NA 1Chr06:49001317–49005605 (+)1.616e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.395e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.395e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.368e-13
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)8.668e-12
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)8.668e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)9.855e-13
Glyma.08G142900 hypothetical protein AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein 1Chr08:10869437–10872439 (+)5.907e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.627e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.166e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.178e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.004e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.294e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.294e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.868e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.513e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)5.632e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.49e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)9.36e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)9.36e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.964e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.964e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.67e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.133e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.133e-16
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.339e-11