Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23045

Metabolite ID
P23045
Deionized mass
120.0929 Da
Average m/z
121.0999
Average RT
14.0204
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 4Chr03:169480–172727 (+)1.002e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.073e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.633e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.708e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.141e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.914e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)1.27e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.073e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)1.912e-14
Glyma.03G001400 hypothetical protein AT2G38610:AT2G38610:RNA-binding KH domain-containing protein 1Chr03:160599–165525 (+)9.788e-12
Glyma.03G002100 hypothetical protein AT5G01930:MAN6:Glycosyl hydrolase superfamily protein 1Chr03:211934–216522 (+)7.921e-11
Glyma.03G002400 hypothetical protein AT5G25780:EIF3B-2:eukaryotic translation initiation factor 3B-2 1Chr03:234217–238375 (-)7.921e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.909e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.911e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)8.387e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.3e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)2.3e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.563e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.369e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.091e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.493e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.493e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.493e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.662e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.141e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.141e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.141e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.141e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.351e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.069e-14
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.069e-14
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.644e-14
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.134e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)6.151e-13
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.895e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.78e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.866e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.866e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.274e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.274e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.351e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.718e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.248e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.824e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.824e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.785e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.535e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)6.535e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)6.534e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.594e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.594e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.914e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.515e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.861e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.707e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.861e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.861e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.633e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.633e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.633e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.633e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.148e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.542e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.652e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.27e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)6.736e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.736e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.395e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.395e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)4.88e-11
Glyma.18G218600 hypothetical protein NA 1Chr18:50541167–50545562 (-)1.269e-11
Glyma.18G219600 CRK59 cysteine-rich receptor-like protein kinase AT4G11470:CRK31:cysteine-rich RLK (RECEPTOR-like protein kinase) 31 1Chr18:50644125–50650550 (+)1.081e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)2.881e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)5.212e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.595e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.916e-15