Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P23001

Metabolite ID
P23001
Deionized mass
405.1054 Da
Average m/z
406.1134
Average RT
14.0048
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)3.966e-12
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)6.396e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)2.641e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.036e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.036e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.062e-14
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.396e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)4.428e-11
Glyma.02G277200 hypothetical protein AT5G12290:DGS1:dgd1 suppressor 1 1Chr02:45999642–46007578 (+)9.723e-11
Glyma.02G277400 hypothetical protein AT2G26770:SCAB1:plectin-like protein 1Chr02:46014763–46020988 (-)9.723e-11
Glyma.02G277500 hypothetical protein AT1G54140:TAFII21:TATA binding protein associated factor 21kDa subunit 1Chr02:46027755–46029924 (+)9.723e-11
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)7.089e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.348e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.959e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)3.589e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.58e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.619e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.619e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.038e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.495e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.107e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.389e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.21e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.301e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.293e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.293e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.919e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.574e-13
Glyma.08G031900 hypothetical protein AT4G29230:NAC075:NAC domain containing protein 75 1Chr08:2547941–2553643 (+)1.068e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)9.606e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)9.735e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.574e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.981e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.02e-14
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.915e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.915e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)1.604e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.748e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.811e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)5.23e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.897e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.509e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.509e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.252e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.252e-15
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.403e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.403e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.036e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.16e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.433e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.816e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.139e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.77e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)6.705e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.068e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)4.772e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)9.203e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)9.203e-12
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)1.579e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.491e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.888e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.32e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.607e-14
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.094e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.094e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)9.995e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.885e-20
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.885e-20
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.362e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.692e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.371e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.056e-11