Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22928

Metabolite ID
P22928
Deionized mass
582.1182 Da
Average m/z
583.1188
Average RT
13.9851
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
112
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

112 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.039e-11
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)2.996e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.645e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 2Chr05:32021521–32025767 (-)1.3e-15
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)2.046e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.488e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.617e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.607e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)3.709e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.346e-11
Glyma.01G010400 SLTI248 DEAD-box RNA helicase AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr01:1009200–1013846 (+)5.36e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)6.586e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.857e-14
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.857e-14
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)9.118e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.329e-12
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)1.259e-11
Glyma.02G303600 hypothetical protein NA 1Chr02:47883626–47887124 (-)9.285e-11
Glyma.02G303700 hypothetical protein NA 1Chr02:47892900–47896207 (+)9.285e-11
Glyma.02G304000 hypothetical protein AT1G51350:AT1G51350:ARM repeat superfamily protein 1Chr02:47908136–47915999 (-)9.285e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.965e-13
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.228e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.896e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.586e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)3.27e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)3.832e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.153e-12
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)9.176e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.087e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.3e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.741e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.69e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.69e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.69e-15
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.241e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.46e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.058e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.913e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.169e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.169e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.508e-12
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)6.661e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)7.577e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.884e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)8.13e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)2.045e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)8.004e-13
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)8.004e-13
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)2.046e-12
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.261e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.844e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.488e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.488e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.488e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.488e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.948e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.146e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)4.692e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.371e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.609e-13
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.579e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)9.359e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.01e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.01e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)6.34e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.267e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.797e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.797e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.797e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.797e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.155e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.155e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.617e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)7.25e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)2.478e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.717e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.587e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.587e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.587e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.08e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)1.17e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)4.821e-13
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)4.821e-13
Glyma.14G072200 Ipk1 AT5G42810:IPK1:inositol-pentakisphosphate 2-kinase 1__AT1G22100:AT1G22100:Inositol-pentakisphosphate 2-kinase family pr… 1Chr14:6059598–6063755 (-)9.882e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.607e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.769e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.67e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.015e-12
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)5.508e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.156e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.156e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)3.372e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.755e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.641e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)1.729e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.645e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.645e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.645e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.645e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.417e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.093e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.278e-13
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)2.09e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.75e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.07e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)4.07e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.834e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.834e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.011e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.346e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)5.37e-11
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)8.107e-11