Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22895

Metabolite ID
P22895
Deionized mass
268.1299 Da
Average m/z
269.1362
Average RT
13.9763
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.526e-11
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)7.126e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.093e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.348e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.852e-11
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)1.268e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)2.187e-14
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)7.123e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)7.123e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.123e-16
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)9.123e-12
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)6.8e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)9.527e-13
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)5.075e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)3.031e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.526e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)3.246e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)6.768e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.922e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.922e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.562e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)4.398e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)5.878e-14
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)3.473e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.524e-13
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.263e-11
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)3.223e-12
Glyma.03G252800 hypothetical protein AT5G18430:AT5G18430:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr03:44849419–44851672 (+)4.511e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.686e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)5.973e-12
Glyma.04G158400 hypothetical protein AT3G42660:AT3G42660:transducin family protein / WD-40 repeat family protein 1Chr04:38560905–38571145 (-)1.456e-11
Glyma.04G160700 hypothetical protein AT1G18610:AT1G18610:Galactose oxidase/kelch repeat superfamily protein 1Chr04:39818871–39825716 (+)1.456e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.132e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.122e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.876e-15
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.876e-15
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.305e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.341e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.341e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.341e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.058e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)1.717e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)3.743e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.897e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.804e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.82e-16
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.867e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.867e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)6.839e-11
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)5.785e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.093e-15
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.093e-15
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.081e-14
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.619e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.251e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.251e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.004e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)7.469e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.123e-16
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.282e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.123e-16
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)9.07e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)9.381e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)1.892e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)1.704e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)5.704e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.114e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.312e-16
Glyma.11G163300 WRKY19 WRKY transcription factor 19 NA 1Chr11:15312631–15316628 (+)1.648e-12
Glyma.11G200700 hypothetical protein NA 1Chr11:28013694–28019971 (-)1.137e-13
Glyma.11G200900 hypothetical protein NA 1Chr11:28076122–28079477 (+)1.137e-13
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)2.082e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.213e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.213e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.081e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)6.23e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.949e-12
Glyma.13G201300 hypothetical protein NA 1Chr13:31497499–31499001 (+)3.007e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.555e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.555e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.555e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.684e-14
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.615e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)1.06e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.398e-12
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)5.075e-11
Glyma.15G030100 hypothetical protein AT2G43290:MSS3:Calcium-binding EF-hand family protein__AT4G03290:AT4G03290:EF hand calcium-binding protein family 1Chr15:2420032–2426219 (+)7.662e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.126e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.63e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.702e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)8.335e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.628e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.348e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.348e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.348e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.348e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.643e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.908e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.553e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.346e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)1.971e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.675e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.71e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.047e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.047e-12
Glyma.18G039500 hypothetical protein AT5G37770:TCH2:EF hand calcium-binding protein family 1Chr18:3218263–3219353 (+)5.625e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)2.123e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.506e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.506e-11
Glyma.19G122900 hypothetical protein AT3G56860:UBA2A:UBP1-associated protein 2A 1Chr19:38107100–38113754 (-)9.253e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)1.636e-12
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)1.636e-12
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)1.636e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.438e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.396e-11