Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P22629

Metabolite ID
P22629
Deionized mass
465.2079 Da
Average m/z
466.2159
Average RT
13.9123
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)2.41e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.384e-13
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)5.411e-14
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)9.95e-17
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.607e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)1.745e-15
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 3Chr17:36319785–36329259 (-)4.626e-16
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)4.802e-14
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)6.111e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)5.879e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)4.049e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.896e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)9.595e-12
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)1.674e-13
Glyma.16G213000 hypothetical protein AT1G48380:RHL1:root hair initiation protein root hairless 1 (RHL1) 2Chr16:37118629–37125494 (-)1.071e-12
Glyma.17G208400 hypothetical protein NA 2Chr17:34184145–34222159 (-)1.115e-11
Glyma.17G212100 hypothetical protein NA 2Chr17:35010757–35014587 (+)1.244e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.626e-16
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.328e-18
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)2.41e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)2.41e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)8.5e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)8.5e-11
Glyma.01G022100 hypothetical protein AT1G51060:HTA10:histone H2A 10 1Chr01:2210751–2211738 (+)3.896e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)8.5e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.139e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)1.331e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.802e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.638e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.917e-13
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.09e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.699e-17
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.956e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.082e-17
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.42e-11
Glyma.06G175200 SEOd NA 1Chr06:14822478–14829186 (-)2.93e-12
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)1.591e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.3e-15
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)4.592e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)3.807e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.896e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.879e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.897e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.128e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.064e-11
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)5.268e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.958e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.443e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.19e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.8e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.723e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)5.772e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)5.772e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.642e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.642e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.642e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.642e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.605e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.193e-11
Glyma.11G110100 hypothetical protein AT2G16510:AT2G16510:ATPase, F0/V0 complex, subunit C protein 1Chr11:8397135–8398949 (-)1.898e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.702e-11
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)7.2e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)2.203e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.362e-12
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.362e-12
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.362e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)4.137e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)5.011e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.449e-15
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.449e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.056e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.452e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.31e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)3.481e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.832e-13
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)2.678e-11
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)2.678e-11
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)2.678e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.218e-15
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.384e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.909e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.708e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.524e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.928e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)8.602e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)7.06e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.393e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)5.698e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.607e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.745e-15
Glyma.16G210500 hypothetical protein NA 1Chr16:36959125–36962955 (+)8.77e-12
Glyma.17G205900 hypothetical protein NA 1Chr17:33578345–33582235 (-)1.775e-13
Glyma.17G206000 hypothetical protein NA 1Chr17:33582328–33583013 (-)1.775e-13
Glyma.17G206100 hypothetical protein NA 1Chr17:33612472–33622199 (-)1.775e-13
Glyma.17G207000 hypothetical protein NA 1Chr17:33925621–33935113 (+)1.115e-11
Glyma.17G208500 hypothetical protein NA 1Chr17:34224093–34230310 (-)1.115e-11
Glyma.17G209600 hypothetical protein AT2G25530:AT2G25530:AFG1-like ATPase family protein 1Chr17:34571688–34581787 (-)1.115e-11
Glyma.17G209700 hypothetical protein NA 1Chr17:34586468–34590309 (+)1.115e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)4.448e-11
Glyma.17G212200 hypothetical protein NA 1Chr17:35064075–35065120 (-)1.49e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)2.32e-13
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)4.956e-13
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)7.944e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)4.884e-14
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.881e-17
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)2.41e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)2.41e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)2.41e-11
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)1.463e-15
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)4.802e-14
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)1.751e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)2.942e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.494e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.494e-12
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)7.481e-11