Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21951

Metabolite ID
P21951
Deionized mass
566.1508 Da
Average m/z
567.1587
Average RT
13.7390
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
100
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

100 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.16e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)3.359e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)6.549e-12
Glyma.08G147300 hypothetical protein NA 2Chr08:11238871–11242682 (+)2.539e-11
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 2Chr08:11253074–11256505 (+)5.633e-14
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.847e-12
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)2.06e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)2.039e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.359e-11
Glyma.01G014800 hypothetical protein NA 1Chr01:1459585–1464612 (+)4.83e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)1.124e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.047e-13
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)3.262e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.763e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.448e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.448e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.448e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.713e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.492e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.583e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)5.44e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)5.011e-16
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.65e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)1.347e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)1.347e-11
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)3.451e-11
Glyma.08G200200 hypothetical protein NA 1Chr08:16187816–16191151 (+)1.049e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)1.046e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)8.976e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)8.976e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.938e-14
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.036e-14
Glyma.09G019400 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr09:1518046–1520807 (+)1.688e-12
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)6.601e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)7.731e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.293e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.961e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.471e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.993e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.993e-15
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)5.668e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.993e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.993e-15
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)8.321e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)5.377e-14
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)5.377e-14
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)5.377e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.331e-15
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)8.321e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)2.726e-15
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)2.311e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.562e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.562e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.247e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.247e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)2.422e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.3e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.3e-12
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.677e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.299e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.039e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.109e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.109e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.109e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.877e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.353e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.212e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)2.346e-11
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)6.289e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.946e-11
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)1.129e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.479e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.474e-13
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.441e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.492e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.524e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)8.664e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.115e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.051e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.051e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)5.332e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)1.454e-12
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)1.737e-12
Glyma.18G228600 hypothetical protein NA 1Chr18:51766615–51767408 (+)3.768e-11
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)5.794e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.17e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)3.17e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)8.981e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.089e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.089e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)8.982e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)8.981e-12
Glyma.19G193500 hypothetical protein NA 1Chr19:45118043–45121712 (-)5.339e-11
Glyma.19G194300 Dt1 AT5G03840:TFL1:PEBP (phosphatidylethanolamine-binding protein) family protein 1Chr19:45183357–45185175 (-)1.291e-12
Glyma.19G194500 hypothetical protein AT2G36270:ABI5:Basic-leucine zipper (bZIP) transcription factor family protein 1Chr19:45201612–45206816 (+)1.291e-12
Glyma.19G194800 hypothetical protein AT2G36250:FTSZ2-1:Tubulin/FtsZ family protein 1Chr19:45215929–45223182 (+)1.291e-12
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)3.321e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.612e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)8.726e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.454e-12