Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21846

Metabolite ID
P21846
Deionized mass
1042.2614 Da
Average m/z
1043.2648
Average RT
13.7082
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
92
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

92 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.916e-14
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)4.147e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 2Chr03:2423540–2428634 (-)8.498e-13
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)1.161e-12
Glyma.07G068600 hypothetical protein NA 2Chr07:6192764–6197166 (+)5.117e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)7.818e-15
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)7.818e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.818e-15
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)2.002e-13
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 2Chr09:47254519–47261787 (-)1.863e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.894e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.194e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.194e-14
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.962e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.394e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)1.231e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.916e-14
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)6.766e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.73e-12
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)7.355e-13
Glyma.01G181000 hypothetical protein NA 1Chr01:51703710–51704994 (-)1.722e-11
Glyma.02G121500 hypothetical protein NA 1Chr02:12065640–12082937 (+)2.121e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.294e-15
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)8.243e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.194e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)8.598e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)8.598e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)8.598e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.762e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.853e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.505e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.426e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.426e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.426e-11
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)5.115e-11
Glyma.07G067600 hypothetical protein NA 1Chr07:6091311–6093654 (-)8.909e-11
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)1.671e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)7.679e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)5.117e-13
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)2.907e-13
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)2.907e-13
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)5.117e-13
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)7.072e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)6.205e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.99e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.392e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.818e-15
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)8.789e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.818e-15
Glyma.08G147500 hypothetical protein AT3G18680:AT3G18680:Amino acid kinase family protein 1Chr08:11253074–11256505 (+)7.078e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)3.183e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.958e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)7.862e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)4.273e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.398e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)9.383e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)4.408e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.089e-12
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)3.766e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)6.053e-14
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)1.863e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.076e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.076e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)3.772e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.486e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.004e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.004e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.004e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.004e-12
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)5.624e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.894e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.988e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.987e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.194e-14
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.125e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)6.56e-17
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.049e-12
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)1.468e-13
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)6.024e-13
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)5.798e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)5.01e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.812e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.812e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)8.563e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.492e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.394e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)4.165e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.048e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.048e-12
Glyma.19G216500 hypothetical protein AT3G62390:TBL6:TRICHOME BIREFRINGENCE-LIKE 6 1Chr19:46951591–46954520 (+)9.873e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.222e-13
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)6.886e-11