Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21765

Metabolite ID
P21765
Deionized mass
1058.2670 Da
Average m/z
1059.2646
Average RT
13.6813
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
99
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

99 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)3.623e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.057e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)4.045e-12
Glyma.04G129500 hypothetical protein AT3G21060:RBL:Transducin/WD40 repeat-like superfamily protein 2Chr04:18096368–18109438 (+)5.926e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.044e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.233e-13
Glyma.14G202500 hypothetical protein NA 2Chr14:46773824–46775761 (+)1.878e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.431e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.057e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)2.462e-13
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)7.768e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)5.219e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)3.186e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)7.232e-11
Glyma.02G182400 hypothetical protein AT3G57550:AGK2:guanylate kinase 1Chr02:31236115–31240230 (-)3.778e-11
Glyma.02G183000 hypothetical protein AT2G41850:PGAZAT:polygalacturonase ADPG2-like protein 1Chr02:31506617–31510674 (+)3.778e-11
Glyma.02G184400 hypothetical protein NA 1Chr02:32182032–32187403 (-)3.778e-11
Glyma.02G184500 hypothetical protein NA 1Chr02:32224919–32226643 (+)3.778e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.983e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.96e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.039e-11
Glyma.04G129600 hypothetical protein NA 1Chr04:18110585–18112762 (+)5.926e-11
Glyma.04G220100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr04:49068045–49073777 (+)2.285e-11
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)1.037e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.873e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)3.189e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.223e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.223e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.223e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.223e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.506e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.903e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.216e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)8.459e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)8.459e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)8.459e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)3.086e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)3.086e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.312e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.312e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.455e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)3.161e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.897e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.136e-14
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)3.422e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.115e-12
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.115e-12
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.53e-13
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)6.59e-11
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)4.979e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.923e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.923e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.497e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.831e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.831e-12
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)9.391e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.831e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.831e-12
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)1.72e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)1.72e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)1.72e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.192e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.03e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)3.638e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.058e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.058e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.058e-13
Glyma.12G003500 hypothetical protein AT5G61670:AT5G61670:orange protein 1Chr12:285588–289372 (-)6.668e-12
Glyma.12G003900 hypothetical protein AT5G51550:EXL3:EXORDIUM like 3 1Chr12:302437–304546 (+)6.384e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.394e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.179e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.523e-11
Glyma.13G160000 hypothetical protein AT3G42170:DAYSLEEPER:BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER 1Chr13:27569790–27575112 (+)1.932e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.042e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.042e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.042e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.207e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.264e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)6.238e-12
Glyma.14G198800 hypothetical protein AT1G07030:AT1G07030:Mitochondrial substrate carrier family protein 1Chr14:46375963–46379746 (-)6.108e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.233e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.404e-14
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)1.878e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)2.989e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.573e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.869e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.167e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.623e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.847e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.535e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.535e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)7.431e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.579e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.579e-14
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)7.545e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)5.358e-11
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)9.177e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.589e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)6.838e-12