Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21578

Metabolite ID
P21578
Deionized mass
530.2077 Da
Average m/z
531.2103
Average RT
13.6097
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)1.005e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)6.923e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)9.509e-13
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)1.689e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.043e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.596e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.596e-13
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)8.502e-14
Glyma.20G106900 hypothetical protein NA 2Chr20:34962043–34967985 (+)2.088e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.013e-14
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)9.523e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.383e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.472e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.472e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.472e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)1.057e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)9.787e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.114e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.213e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.114e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.283e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.105e-13
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)5.261e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.201e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.233e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)4.918e-12
Glyma.06G202000 hypothetical protein AT5G07940:AT5G07940:dentin sialophosphoprotein-like protein 1Chr06:18655235–18667810 (-)2.538e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.854e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.316e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.415e-11
Glyma.07G202300 IFS1 isoflavone synthase 1 NA 1Chr07:37166660–37169027 (+)4.619e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.616e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)3.842e-12
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)3.842e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.686e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.151e-11
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)4.153e-13
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)2.03e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.369e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.369e-13
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)4.933e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)4.285e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)4.285e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)5.455e-11
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)5.362e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.043e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.051e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.051e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.596e-13
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.209e-12
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)4.145e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.277e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)9.614e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)3.017e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)2.408e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.243e-13
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.87e-11
Glyma.16G173000 hypothetical protein NA 1Chr16:33365497–33367017 (+)8.585e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.218e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.823e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.872e-12
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)1.698e-12
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)9.509e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.595e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.595e-11
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)5.422e-12
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)9.948e-11
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)8.129e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)3.195e-12
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)1.242e-11
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)9.102e-12
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)1.214e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.53e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.355e-13