Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21409

Metabolite ID
P21409
Deionized mass
292.1862 Da
Average m/z
293.1938
Average RT
13.5627
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
102
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

102 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217300 hypothetical protein AT2G25170:PKL:chromatin remodeling factor CHD3 (PICKLE) 6Chr17:36638143–36669455 (-)6.587e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.745e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)9.754e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.036e-12
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)5.057e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.385e-12
Glyma.02G121500 hypothetical protein NA 2Chr02:12065640–12082937 (+)3.048e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)5.116e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.21e-17
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.21e-17
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.21e-17
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.086e-14
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 2Chr09:47254519–47261787 (-)9.253e-11
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)6.092e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.492e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)8.482e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.356e-17
Glyma.17G217200 hypothetical protein AT4G31910:BAT1:HXXXD-type acyl-transferase family protein 2Chr17:36624152–36630712 (-)6.587e-11
Glyma.17G217600 hypothetical protein NA 2Chr17:36695797–36698982 (-)6.587e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.745e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)9.251e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.71e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.71e-11
Glyma.02G122100 hypothetical protein NA 1Chr02:12134374–12137612 (+)3.048e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.027e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.006e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.993e-18
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.338e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.292e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.311e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.022e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.022e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.069e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.927e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.927e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.927e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.992e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.156e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.293e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.463e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)1.415e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)5.116e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)8.515e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.21e-17
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.195e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.21e-17
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)1.542e-11
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)1.542e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)7.781e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.617e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)6.108e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)3.835e-11
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)9.253e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.228e-12
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)9.308e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.598e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.168e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.33e-15
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.139e-15
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.179e-15
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.179e-15
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.179e-15
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.179e-15
Glyma.11G061000 hypothetical protein AT4G37210:AT4G37210:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:4576441–4579697 (+)3.683e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.733e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.733e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.917e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.917e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.428e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.428e-11
Glyma.13G149700 hypothetical protein AT3G10040:AT3G10040:sequence-specific DNA binding transcription factor 1Chr13:26321941–26324172 (+)8.386e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.499e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)6.092e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.866e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.108e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.866e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.866e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.394e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)5.636e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.073e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)9.275e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)3.53e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.173e-13
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.116e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.874e-14
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.475e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)3.087e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.519e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.763e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.036e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.609e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.609e-14
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)2.528e-11
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)7.527e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.882e-15
Glyma.17G217000 hypothetical protein NA 1Chr17:36553695–36556013 (+)6.587e-11
Glyma.17G217100 hypothetical protein NA 1Chr17:36599289–36605544 (+)6.587e-11
Glyma.17G217800 hypothetical protein NA 1Chr17:36740653–36743352 (-)6.587e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.385e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)7.862e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.521e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.707e-12