Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P21082

Metabolite ID
P21082
Deionized mass
119.0422 Da
Average m/z
120.0490
Average RT
13.4828
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
141
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

141 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.013e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)7.734e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)3.716e-13
Glyma.02G115900 hypothetical protein AT1G26480:GRF12:ral regulatory factor 12 2Chr02:11280858–11285984 (+)8.665e-13
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 2Chr05:2965889–2971412 (-)2.456e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)5.599e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.448e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)4.932e-17
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)4.508e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.027e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)3.546e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.053e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.302e-12
Glyma.16G178800 hypothetical protein NA 2Chr16:33950003–33953968 (-)1.152e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)3.684e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)5.086e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.651e-11
Glyma.02G063800 hypothetical protein AT2G39200:MLO12:Seven transmembrane MLO family protein 1Chr02:5720590–5724380 (+)9.73e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.62e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.404e-12
Glyma.02G115800 hypothetical protein AT3G45400:AT3G45400:exostosin family protein 1Chr02:11274699–11278656 (-)2.871e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.286e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)5.174e-13
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)7.775e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.755e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.774e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.387e-18
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.933e-16
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.084e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.541e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.258e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.274e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.48e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.48e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.48e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)9.053e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.554e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.249e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.526e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)8.168e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.307e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.307e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.307e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.082e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.082e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.68e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)1.018e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)8.042e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)6.661e-12
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)7.411e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.591e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.591e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.837e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.744e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)3.52e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.693e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.448e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.448e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.448e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.448e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)8.272e-12
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)8.272e-12
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)3.431e-11
Glyma.08G142900 hypothetical protein AT2G21860:AT2G21860:violaxanthin de-epoxidase-like protein 1Chr08:10869437–10872439 (+)2.825e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.258e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.695e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.915e-20
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.278e-18
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.322e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)6.258e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.428e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.428e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.428e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.428e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.281e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.709e-14
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)2.121e-14
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.708e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.035e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.386e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.386e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.386e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.386e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)7.302e-18
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.05e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.05e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)4.411e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)8.519e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.932e-17
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.28e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.546e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)4.981e-12
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.289e-15
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)1.436e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)1.251e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)1.251e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.092e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)7.498e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.057e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)7.498e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)7.498e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.291e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.131e-16
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.013e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.013e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.013e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.013e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.589e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)7.735e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)7.735e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.914e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.169e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.462e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.882e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.882e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)5.737e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)9.34e-11
Glyma.16G165300 hypothetical protein NA 1Chr16:32447317–32449688 (-)6.985e-11
Glyma.16G167500 hypothetical protein NA 1Chr16:32707122–32710495 (+)5.575e-11
Glyma.16G178700 hypothetical protein AT5G52660:AT5G52660:Homeodomain-like superfamily protein 1Chr16:33941617–33948775 (+)1.269e-11
Glyma.16G178900 hypothetical protein AT4G25720:QC:glutaminyl cyclase 1Chr16:33954446–33960344 (+)1.269e-11
Glyma.16G179100 BCH2 beta-carotene hydroxylase BCH2 AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 1Chr16:33969618–33972333 (-)1.269e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)5.416e-12
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)6.914e-12
Glyma.17G118900 hypothetical protein NA 1Chr17:9401882–9402864 (+)3.98e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)6.032e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.678e-14
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)5.736e-13
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)1.715e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)7.664e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.199e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.905e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)3.16e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)3.209e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.013e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.013e-13
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)2.398e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)3.03e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.432e-11
Glyma.20G018000 hypothetical protein AT1G70820:AT1G70820:phosphoglucomutase, putative / glucose phosphomutase 1Chr20:1840259–1844405 (-)4.618e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.587e-13