Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20879

Metabolite ID
P20879
Deionized mass
1190.3168 Da
Average m/z
1191.3229
Average RT
13.4223
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
94
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

94 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 4Chr16:26324650–26336836 (+)3.141e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.167e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.421e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.676e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.676e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.676e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.797e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.463e-13
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)2.414e-14
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)9.75e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.139e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.139e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.509e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)5.944e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)5.039e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)7.396e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)7.396e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)7.396e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.437e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)1.084e-12
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)5.105e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.623e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.736e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.811e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.236e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.384e-24
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.736e-14
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.051e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.051e-15
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.555e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)4.113e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.555e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.555e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)4.113e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)5.947e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.362e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.418e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.418e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)5.959e-12
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.083e-14
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.676e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.676e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.676e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.684e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.676e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.676e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.215e-12
Glyma.12G096000 hypothetical protein AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein 1Chr12:8080306–8088711 (-)5.679e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.236e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.236e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.746e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.746e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.785e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.125e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.463e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.388e-11
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)1.681e-13
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)1.474e-13
Glyma.13G053300 hypothetical protein NA 1Chr13:15064460–15069264 (-)1.175e-11
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)7.05e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)9.75e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.607e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.607e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.139e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)5.862e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)5.862e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)5.862e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)3.631e-12
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)2.608e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.436e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.989e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.436e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.436e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.509e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.167e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.167e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.167e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.167e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.742e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.767e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.421e-13
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.421e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)4.206e-11
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)8.934e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.199e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)2.411e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.593e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.311e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.878e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.075e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.544e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.544e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.646e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6e-14