Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20777

Metabolite ID
P20777
Deionized mass
277.1657 Da
Average m/z
278.1725
Average RT
13.3959
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
103
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

103 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G068800 hypothetical protein NA 3Chr07:6211775–6221107 (-)4.348e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 3Chr17:36319785–36329259 (-)1.574e-14
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)1.61e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)2.69e-15
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)1.544e-13
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 2Chr07:6169729–6172231 (+)1.581e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)1.202e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.324e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.324e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.726e-11
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)3.489e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.574e-14
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.232e-12
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)5.424e-14
Glyma.01G021000 hypothetical protein NA 1Chr01:2122589–2125447 (+)3.191e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)6.981e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)1.657e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.444e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.046e-15
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.027e-12
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)2.012e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.065e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.863e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.847e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.288e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.288e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.044e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.29e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.29e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.29e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.389e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.273e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.632e-18
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)2.16e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)2.16e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)2.16e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.096e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.415e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.415e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.52e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)9.478e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)1.968e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)1.968e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.484e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)1.968e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)8.033e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)7.309e-14
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.764e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.71e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.178e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.961e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.263e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.263e-11
Glyma.11G000700 hypothetical protein AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr11:33497–35198 (+)3.085e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.152e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.648e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.648e-13
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)3.752e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.324e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.324e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.52e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.824e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.049e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)6.763e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)7.67e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.7e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.451e-25
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.579e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.726e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.746e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.932e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.746e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.746e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.013e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.683e-13
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.91e-11
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)5.91e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.03e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.2e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.526e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)1.483e-12
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.078e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)8.081e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.081e-11
Glyma.17G034100 hypothetical protein AT4G16210:ECHIA:enoyl-CoA hydratase/isomerase A 1Chr17:2492326–2494702 (+)4.547e-11
Glyma.17G212200 hypothetical protein NA 1Chr17:35064075–35065120 (-)9.606e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)6.918e-11
Glyma.17G213000 hypothetical protein NA 1Chr17:35353582–35358772 (+)1.075e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)6.967e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)4.467e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.475e-16
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)4.928e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)4.929e-11
Glyma.18G242900 hypothetical protein NA 1Chr18:53113341–53119592 (-)7.281e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)6.668e-11
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)8.439e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.224e-11
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)1.61e-12
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)1.61e-12
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)1.61e-12
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)1.61e-12
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)2.197e-11
Glyma.19G041000 hypothetical protein NA 1Chr19:5964641–5965947 (-)2.197e-11