Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20649

Metabolite ID
P20649
Deionized mass
362.1091 Da
Average m/z
363.1156
Average RT
13.3566
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
129
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

129 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.09e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)9.472e-13
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.094e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.687e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.841e-14
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)2.806e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.326e-11
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)3.217e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)2.168e-12
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 2Chr19:38346007–38347425 (-)1.502e-12
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)8.7e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.374e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.374e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.186e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.639e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.924e-15
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.742e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.644e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.78e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.397e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.67e-13
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)7.901e-12
Glyma.04G235400 hypothetical protein AT3G49260:iqd21:IQ-domain 21 1Chr04:50351726–50356449 (-)6.047e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.338e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.894e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.695e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.245e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.814e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.814e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.814e-13
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.749e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)8.362e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.193e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.637e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.071e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.32e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.026e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)5.535e-14
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)5.535e-14
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)2.882e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.282e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.282e-14
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)4.263e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)9.132e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)9.132e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)9.133e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.09e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.09e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.88e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.487e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.488e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.848e-11
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)5.258e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.689e-18
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.037e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.841e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.841e-14
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.687e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.841e-14
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.548e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.644e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)4.441e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.938e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)8.161e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.56e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.618e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.618e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.618e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.618e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.348e-15
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.033e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.156e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.627e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.627e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.627e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.627e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)3.672e-11
Glyma.11G119600 hypothetical protein AT2G16130:PMT2:polyol/monosaccharide transporter 2 1Chr11:9127497–9129972 (-)5.871e-12
Glyma.11G122700 hypothetical protein NA 1Chr11:9354319–9356396 (-)5.241e-12
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.255e-14
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)2.328e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)9.659e-16
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)9.659e-16
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)9.659e-16
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.508e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)2.724e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.47e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.47e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.438e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.438e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)7.848e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.533e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.533e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.555e-12
Glyma.12G212500 hypothetical protein NA 1Chr12:37150677–37158587 (+)1.944e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)9.06e-12
Glyma.13G142200 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr13:25483702–25502265 (+)2.812e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.85e-12
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)9.998e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.472e-13
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)1.173e-14
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.326e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.874e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)8.395e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.118e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.682e-14
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)2.729e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)4.338e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.168e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.055e-12
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)2.834e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)7.366e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.59e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)9.062e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.223e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.223e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.731e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.731e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)2.265e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.751e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)6.611e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)3.975e-11
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)6.012e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)1.502e-12
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)1.502e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.569e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.807e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)7.094e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)7.041e-11