Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P20643

Metabolite ID
P20643
Deionized mass
728.2711 Da
Average m/z
729.2757
Average RT
13.3554
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
126
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

126 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)3.973e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)2.425e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.17e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.193e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)9.676e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 2Chr02:39040135–39043181 (-)2.853e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)3.902e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)3.901e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)3.902e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.403e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)8.272e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.09e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)6.946e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.17e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.839e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)8.202e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.668e-15
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)1.969e-13
Glyma.01G047300 hypothetical protein AT1G27090:AT1G27090:glycine-rich protein 1Chr01:5514127–5517339 (+)3.417e-11
Glyma.01G047500 hypothetical protein NA 1Chr01:5528742–5532260 (-)3.417e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)1.474e-14
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.621e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.545e-15
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)8.622e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.258e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)5.501e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)5.501e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)5.501e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)5.501e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)5.501e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)5.501e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)5.501e-13
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)6.028e-12
Glyma.02G129200 hypothetical protein AT1G26160:AT1G26160:Metal-dependent phosphohydrolase 1Chr02:13217893–13226292 (+)5.735e-11
Glyma.02G130200 hypothetical protein AT1G68740:PHO1;H1:EXS (ERD1/XPR1/SYG1) family protein 1Chr02:13340016–13346701 (-)5.735e-11
Glyma.02G130700 hypothetical protein AT1G68750:PPC4:phosphoenolpyruvate carboxylase 4 1Chr02:13470428–13489647 (-)5.735e-11
Glyma.02G131600 hypothetical protein AT4G34020:DJ1C:Class I glutamine amidotransferase-like superfamily protein 1Chr02:13577916–13581914 (+)5.735e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.59e-16
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)1.073e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)4.648e-11
Glyma.02G205500 hypothetical protein AT5G57870:eIFiso4G1:MIF4G domain-containing protein / MA3 domain-containing protein 1Chr02:39045905–39052694 (-)4.824e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.529e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.023e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.546e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)1.932e-12
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)5.377e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)3.388e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)1.774e-11
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)1.774e-11
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)1.774e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.044e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.224e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.224e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.258e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.546e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.546e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.546e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.719e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.625e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.246e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.219e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.219e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)4.295e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.193e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.193e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.988e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)2.099e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)2.099e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)8.466e-12
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)5.952e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.175e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.202e-13
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)4.039e-12
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)2.216e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)3.902e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)3.902e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)3.902e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.64e-13
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)3.902e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)3.902e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.608e-12
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.922e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.141e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.141e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)7.107e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.141e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.141e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.09e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.121e-12
Glyma.10G082200 hypothetical protein NA 1Chr10:9967027–9970045 (-)1.088e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.158e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.106e-16
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)3.483e-11
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)8.679e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.941e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.941e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.941e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.707e-14
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)6.805e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.865e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)5.805e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.453e-11
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)4.161e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.861e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.579e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.444e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)3.39e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)6.443e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)8.219e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.4e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.267e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.267e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.206e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.206e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.77e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)6.79e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.09e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.097e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.097e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.049e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.397e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.019e-13
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)2.015e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)4.738e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.058e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.449e-12