Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19976

Metabolite ID
P19976
Deionized mass
711.1701 Da
Average m/z
712.1772
Average RT
13.1764
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
122
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

122 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G210200 hypothetical protein NA 5Chr16:36933402–36938940 (+)4.848e-14
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)3.685e-11
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)6.798e-16
Glyma.17G217900 hypothetical protein NA 4Chr17:36771760–36778616 (-)4.279e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.281e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.59e-11
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)6.78e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 3Chr16:35831912–35835153 (+)3.678e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)8.738e-17
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)9.233e-15
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)3.703e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.265e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.265e-12
Glyma.13G201600 hypothetical protein NA 2Chr13:31521512–31522992 (+)8.014e-13
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)2.594e-11
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)7.558e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)6.78e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.045e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)8.776e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.008e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.083e-13
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)2.471e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)5.147e-12
Glyma.02G303800 hypothetical protein AT3G20910:NF-YA9:nuclear factor Y, subunit A9 1Chr02:47896187–47900062 (-)6.145e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.925e-13
Glyma.03G035800 hypothetical protein NA 1Chr03:4317466–4321009 (+)8.583e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.901e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.294e-11
Glyma.04G096300 hypothetical protein NA 1Chr04:8635554–8654734 (+)2.113e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)3.685e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)3.685e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)3.685e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.825e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)4.035e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)6.513e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)6.513e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.965e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.134e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.134e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.134e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.281e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.54e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.127e-22
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.258e-19
Glyma.06G084200 hypothetical protein NA 1Chr06:6479142–6484077 (+)1.268e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.182e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.182e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.182e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)7.774e-15
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.278e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.166e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)4.281e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.281e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.281e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.66e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)4.245e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)6.154e-14
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)2.505e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.917e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)8.565e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)3.848e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.063e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.813e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)6.338e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.036e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.059e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)1.054e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.309e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)2.19e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.96e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.96e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.362e-18
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.362e-18
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.658e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.658e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.004e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)9.1e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)9.1e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)2.31e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)7.777e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.59e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.609e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.807e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.807e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.265e-12
Glyma.13G200700 hypothetical protein NA 1Chr13:31431165–31434011 (-)8.1e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.512e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.512e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.512e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.965e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.427e-13
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.669e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.279e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.018e-15
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)8.985e-14
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)7.6e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.234e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.979e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)7.558e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.994e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.78e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)6.78e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.682e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.124e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.101e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.98e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)5.356e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.378e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.855e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)8.738e-17
Glyma.16G210500 hypothetical protein NA 1Chr16:36959125–36962955 (+)5.143e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)6.582e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)2.932e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.52e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.008e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)9.233e-15
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)6.99e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.471e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)1.618e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.471e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)1.026e-13
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)5.131e-12