Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19716

Metabolite ID
P19716
Deionized mass
512.2766 Da
Average m/z
513.2850
Average RT
13.1040
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
46
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

46 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.177e-16
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)6.5e-12
Glyma.08G184300 hypothetical protein NA 2Chr08:14784345–14786953 (+)1.618e-11
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)1.88e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)9.68e-12
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.037e-11
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)3.891e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.888e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.172e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.639e-14
Glyma.06G276300 hypothetical protein NA 1Chr06:46741410–46744086 (-)9.24e-11
Glyma.06G283400 hypothetical protein NA 1Chr06:47132958–47137448 (+)7.911e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.727e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.098e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.727e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.727e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.098e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)8.42e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.322e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.164e-11
Glyma.06G322000 hypothetical protein AT5G56170:LLG1:LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 1Chr06:51042976–51045446 (-)1.626e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.493e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.575e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.843e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)9.858e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.849e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.376e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.849e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.849e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.094e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.612e-15
Glyma.15G125800 copz2 AT1G60970:AT1G60970:SNARE-like superfamily protein 1Chr15:9966956–9969650 (+)4.549e-13
Glyma.15G125900 hypothetical protein AT1G29820:AT1G29820:Magnesium transporter CorA-like family protein__AT1G29830:AT1G29830:Magnesium transporter CorA-like… 1Chr15:9970216–9977246 (-)4.549e-13
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.016e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.276e-13
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)3.005e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.496e-14
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)2.177e-16
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)6.969e-15
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.339e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.02e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)9.657e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.639e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.187e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.233e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.233e-11