Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19653

Metabolite ID
P19653
Deionized mass
750.2553 Da
Average m/z
751.2633
Average RT
13.0919
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
115
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

115 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)2.521e-11
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)5.793e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)2.757e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.222e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.312e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)2.319e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.442e-11
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)3.034e-11
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)4.023e-11
Glyma.16G137000 hypothetical protein NA 2Chr16:29418205–29421765 (-)1.318e-11
Glyma.16G137100 hypothetical protein NA 2Chr16:29421091–29421534 (+)1.318e-11
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)4.677e-13
Glyma.17G199600 hypothetical protein AT2G45330:emb1067:RNA 2'-phosphotransferase, Tpt1 / KptA family 2Chr17:31731965–31738073 (+)2.781e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.179e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)9.616e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.6e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)5.793e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.706e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)5.207e-12
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)9.529e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.492e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.968e-16
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.864e-14
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)4.016e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.69e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.463e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.725e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.393e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.878e-17
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.642e-17
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.642e-17
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)5.979e-18
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.42e-17
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.42e-17
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.42e-17
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.017e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.214e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.141e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.367e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.043e-17
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.403e-18
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.403e-18
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.371e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)5.921e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)5.921e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)8.343e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)4.116e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)4.116e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.116e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.116e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)4.116e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)6.363e-12
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)7.364e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.94e-11
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)4.491e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.222e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.222e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.222e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.222e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.845e-13
Glyma.09G068800 hypothetical protein AT5G35560:AT5G35560:DENN (AEX-3) domain-containing protein 1Chr09:6979166–6993110 (-)3.483e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.509e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.952e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.48e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)3.113e-12
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)7.489e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.282e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.282e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.442e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.945e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.244e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.244e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.244e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.244e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.631e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.631e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.301e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.3e-12
Glyma.13G067900 hypothetical protein NA 1Chr13:16787469–16789119 (+)3.712e-11
Glyma.13G068200 hypothetical protein AT5G14940:AT5G14940:Major facilitator superfamily protein 1Chr13:16825383–16836935 (+)2.558e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.02e-12
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)5.62e-12
Glyma.13G164300 hypothetical protein NA 1Chr13:27934139–27936052 (-)3.527e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.663e-11
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)2.69e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.054e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.016e-12
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)9.833e-14
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)2.319e-13
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)7.534e-12
Glyma.14G150300 hypothetical protein AT4G08330:AT4G08330:uncharacterized protein 1Chr14:32471354–32474446 (-)1.168e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.442e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.185e-12
Glyma.15G024500 hypothetical protein AT3G13810:IDD11:indeterminate(ID)-domain 11 1Chr15:1970818–1978651 (-)5.128e-11
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)1.851e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.513e-12
Glyma.16G064100 hypothetical protein NA 1Chr16:6322034–6325343 (-)2.613e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)9.531e-14
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.987e-16
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.162e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.331e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.105e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.105e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)6.958e-16
Glyma.17G200400 hypothetical protein NA 1Chr17:31864566–31869426 (-)2.781e-11
Glyma.17G201000 hypothetical protein AT3G49600:UBP26:ubiquitin-specific protease 26 1Chr17:31946807–31956876 (-)2.781e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.179e-12
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.976e-12
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)5.238e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)8.816e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.376e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.376e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.527e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.611e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.217e-13