Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19573

Metabolite ID
P19573
Deionized mass
481.1106 Da
Average m/z
482.1207
Average RT
13.0815
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
72
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

72 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.235e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.162e-11
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.695e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.406e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)3.716e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.235e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)9.272e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.826e-14
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.884e-11
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.071e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.088e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)2.568e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.482e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.815e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.318e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.004e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.004e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.795e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.268e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.268e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.268e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.343e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.717e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.37e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.278e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.278e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.278e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.925e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.925e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.925e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.557e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)8.378e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)3.286e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.286e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.162e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.162e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.162e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.162e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)5.683e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)4.415e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.114e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.111e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.884e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.408e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.408e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.408e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.408e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.279e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.228e-12
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)7.111e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)5.018e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)6.166e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.512e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.512e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.066e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.066e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)9.656e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.696e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.406e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.436e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.436e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.436e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)9.443e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.685e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.547e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.454e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.178e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.264e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.264e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)7.896e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.884e-11