Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P19317

Metabolite ID
P19317
Deionized mass
664.2887 Da
Average m/z
665.2955
Average RT
13.0135
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.245e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.203e-14
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)1.306e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.483e-15
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.125e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.695e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.748e-12
Glyma.14G171400 hypothetical protein NA 2Chr14:42398866–42404627 (+)1.366e-12
Glyma.15G263500 hypothetical protein AT1G79440:ALDH5F1:aldehyde dehydrogenase 5F1 2Chr15:49664672–49682418 (+)2.348e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.703e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.327e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.245e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.312e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.805e-13
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)1.452e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)5.549e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)3.542e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)7.045e-12
Glyma.02G253300 hypothetical protein NA 1Chr02:44063023–44065910 (-)1.252e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.518e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.377e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.795e-16
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)8.575e-11
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)2.039e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.894e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.92e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.92e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.738e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)5.648e-16
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)5.648e-16
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)5.648e-16
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)5.615e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.102e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.691e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.463e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.383e-18
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.659e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.659e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)6.916e-11
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)5.497e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)2.549e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)8.658e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)4.086e-12
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)4.086e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.695e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.695e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.695e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.695e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.584e-14
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.05e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.554e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.964e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)6.709e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)6.727e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.9e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)4.366e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)4.366e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)4.366e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)4.366e-13
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)2.309e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.429e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.203e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.832e-13
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.491e-11
Glyma.14G150000 hypothetical protein AT1G21830:AT1G21830:uncharacterized protein 1Chr14:32314092–32316626 (+)4.22e-11
Glyma.14G171200 hypothetical protein AT1G19970:AT1G19970:ER lumen protein retaining receptor family protein 1Chr14:42387905–42389129 (+)1.366e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.207e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)3.521e-11
Glyma.16G178800 hypothetical protein NA 1Chr16:33950003–33953968 (-)9.174e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.008e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.008e-11
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)5.299e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)3.338e-11
Glyma.17G215200 hypothetical protein NA 1Chr17:36125880–36142936 (+)2.887e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.145e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)7.703e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.412e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)4.582e-12