Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18597

Metabolite ID
P18597
Deionized mass
482.2431 Da
Average m/z
483.2492
Average RT
12.7946
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.615e-14
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)8.295e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.423e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)1.615e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)6.086e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)9.871e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)9.87e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.753e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)5.755e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)3.919e-11
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)3.792e-14
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)6.133e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.511e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.673e-14
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)3.493e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)2.39e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.301e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)1.029e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.789e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.178e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.178e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.178e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.976e-14
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.976e-14
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)1.912e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.257e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.257e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.615e-14
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.002e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.003e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.154e-16
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)8.626e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.068e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.935e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)4.695e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)2.191e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)2.191e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.086e-17
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.417e-12
Glyma.13G081100 hypothetical protein NA 1Chr13:18881427–18886462 (-)8.291e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.789e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.789e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)9.871e-13
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)1.347e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.347e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.1e-13
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.609e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.423e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.871e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.871e-11
Glyma.16G210500 hypothetical protein NA 1Chr16:36959125–36962955 (+)1.434e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.011e-14
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)6.186e-12
Glyma.18G268000 hypothetical protein NA 1Chr18:55205656–55213313 (-)7.695e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.829e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.829e-12
Glyma.19G122900 hypothetical protein AT3G56860:UBA2A:UBP1-associated protein 2A 1Chr19:38107100–38113754 (-)1.667e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.191e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.93e-11