Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P18589

Metabolite ID
P18589
Deionized mass
539.1819 Da
Average m/z
540.1887
Average RT
12.7925
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.237e-14
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 3Chr03:2202325–2234931 (+)7.555e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.286e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)5.721e-11
Glyma.03G021000 hypothetical protein NA 2Chr03:2148298–2162954 (-)7.555e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 2Chr03:2240686–2246512 (-)5.048e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)3.279e-14
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)1.564e-16
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)9.059e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)2.559e-13
Glyma.16G210200 hypothetical protein NA 2Chr16:36933402–36938940 (+)2.624e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)3.675e-11
Glyma.01G234100 hypothetical protein AT5G13270:RARE1:Pentatricopeptide repeat (PPR) superfamily protein 1Chr01:56022128–56026001 (+)5.576e-11
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)4.988e-12
Glyma.03G017000 hypothetical protein AT3G61060:PP2-A13:phloem protein 2-A13 1Chr03:1716204–1719596 (+)3.521e-11
Glyma.05G131100 hypothetical protein AT5G60620:GPAT9:glycerol-3-phosphate acyltransferase 9 1Chr05:32411641–32419257 (+)2.552e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.552e-11
Glyma.05G131500 hypothetical protein AT5G44800:CHR4:chromatin remodeling 4 1Chr05:32446303–32473428 (+)4.068e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.915e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.011e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.71e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.724e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)4.526e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.207e-11
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)1.816e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)1.564e-16
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)5.137e-15
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.655e-16
Glyma.08G183700 Fasciclin-like arabinogalactan protein 19 NA 1Chr08:14738283–14742033 (+)7.792e-11
Glyma.11G183800 hypothetical protein AT5G22450:AT5G22450:spectrin beta chain, brain 1Chr11:25162867–25173439 (-)9.102e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)5.813e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.5e-14
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.442e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.88e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.841e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.88e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.88e-11
Glyma.16G075800 hypothetical protein AT4G19420:AT4G19420:Pectinacetylesterase family protein 1Chr16:7646131–7651379 (+)1.548e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)6.503e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)6.618e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)1.403e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)8.041e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.039e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)2.027e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.024e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.024e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)7.501e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)3.675e-11