Overview Annotation GWAS Evidence Associated genes

P18539

Metabolite ID
P18539
Deionized mass
394.2146 Da
Average m/z
395.2222
Average RT
12.7813
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
136
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

136 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)2.226e-23
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.095e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.301e-12
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)1.509e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)4.273e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.754e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 2Chr07:9523110–9526319 (+)1.922e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.938e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.894e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)1.822e-12
Glyma.15G140400 hypothetical protein NA 2Chr15:11495189–11495691 (+)2.85e-11
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)5.439e-11
Glyma.16G105100 hypothetical protein NA 2Chr16:21259552–21267517 (-)1.118e-17
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)2.226e-23
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)2.273e-14
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.295e-16
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.095e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.549e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.482e-16
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.084e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.891e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.172e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.172e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.52e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.361e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.361e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.361e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)6.444e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)7.619e-12
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)4.36e-12
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)1.609e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)1.609e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)1.609e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)1.609e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.638e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.831e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.952e-22
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.34e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.34e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.34e-12
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.783e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.783e-11
Glyma.06G121000 hypothetical protein NA 1Chr06:9848464–9850191 (-)2.378e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.423e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.423e-15
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.302e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.519e-11
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)3.597e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.969e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)7.334e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.969e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.969e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)7.334e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.234e-15
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)5.287e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)8.239e-12
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)2.418e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.22e-14
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.238e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)9.07e-13
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)4.802e-11
Glyma.09G056100 hypothetical protein AT2G18915:LKP2:LOV KELCH protein 2 1Chr09:5011260–5022738 (-)2.705e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)2.39e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)2.39e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)2.868e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)9.079e-14
Glyma.09G068500 PHD6 PHD finger protein GmPHD6 AT5G20510:AL5:alfin-like 5 1Chr09:6937814–6941687 (+)9.073e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.002e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.024e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.274e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.842e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.31e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.31e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)6.568e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.31e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.31e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.218e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)2.95e-15
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)2.95e-15
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)2.95e-15
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.512e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)3.667e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.04e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.04e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.826e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.894e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)3.245e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.363e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)5.318e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.301e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.829e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.249e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.709e-15
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.738e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.822e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)7.26e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.179e-12
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.179e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.159e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.486e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.159e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.159e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.008e-16
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)7.927e-22
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)1.845e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.319e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.436e-12
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.329e-13
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.329e-13
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.329e-13
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)8.667e-20
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)1.241e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)7.302e-21
Glyma.16G117300 hypothetical protein NA 1Chr16:26226934–26227350 (+)2.098e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.318e-13
Glyma.16G120600 hypothetical protein AT5G11980:AT5G11980:conserved oligomeric Golgi complex component-related / COG complex component-like protein 1Chr16:26851941–26857783 (-)2.582e-11
Glyma.16G122000 hypothetical protein NA 1Chr16:27060846–27062835 (-)2.582e-11
Glyma.16G122200 hypothetical protein AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr16:27104326–27110822 (-)2.582e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.119e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.347e-14
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)9.768e-11
Glyma.16G158300 hypothetical protein AT5G43140:AT5G43140:Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 1Chr16:31859405–31862567 (+)2.748e-11
Glyma.16G158400 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr16:31863760–31867327 (-)2.748e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.227e-13
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)2.607e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)7.939e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)5.128e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.776e-14
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)1.237e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)8.131e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.26e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.26e-15
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)3.772e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.009e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.465e-13
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.388e-11